Conserved Protein Domain Family
PorD_KorD

?
TIGR02179: PorD_KorD 
2-oxoacid:acceptor oxidoreductase, delta subunit, pyruvate/2-ketoisovalerate family
A number of anaerobic and microaerophilic species lack pyruvate dehydrogenase and have instead a four subunit, oxygen-sensitive pyruvate oxidoreductase, with either ferredoxins or flavodoxins used as the acceptor. Several related four-subunit enzymes may exist in the same species. This model describes a subfamily of delta subunits, representing mostly pyruvate, 2-ketoisovalerate, and 2-oxoglutarate specific enzymes. The delta subunit is the smallest and resembles ferredoxins.
Statistics
?
PSSM-Id: 131234
View PSSM: TIGR02179
Aligned: 14 rows
Threshold Bit Score: 100.485
Threshold Setting Gi: 385230400
Created: 8-Oct-2014
Updated: 23-Jan-2015
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 41033685   15 ITEPGSSRRNLTGGWRSLRPVIHDERCIRCRVCWMYCPEG-TIKEVRgEfvvkghkyqvKYEIDYNYCKGCGICAHECPV 93
gi 6685754    15 IDKPGTAREYKTGAWRVMRPILHKEKCIDCMFCWLYCPDQaIIQEGG-I----------MKGFNYDYCKGCGLCANVCPK 83
gi 6685747     8 VKKPGSTVKNKTGSWRTFKPVLDKDKCIDCDNCILFCPEG-CINR--------------EHEIDYDYCKGCGICAEKCPV 72
gi 6686092    28 VSLGITLVN-FTGDWRTFMPVIDESKCVKCYICWKYCPEP-AIYIKEdG----------FVAIDYDYCKGCGICANECPT 95
gi 18161530    4 LSKPAPASAGITGTWRTYKPVVNLSKCIDCGLCWLYCPES-VIDWEKgT----------KVRIDYDFCKGCGICADVCPV 72
gi 19913777    8 TCEPGSTLANKTGGWRNFRPVYIYEKCTKCGICQIVCPDM-SVLPREdG----------FFEYNYDYCKGCGICANECPA 76
gi 497675878  10 VARPKIGSAGKTGLWRVEKPVISYDKCTKCRLCVLYCLEN-TIDLLEnL----------YPQIDYDYCKGCGVCAQVCPP 78
gi 497676066  18 ITRPNKGAGGRTGAWRIVKPVVDYSKCIGCKACFMFCPES-TIVP-SnG----------KVRVDYEYCKGCGVCANVCPV 85
gi 499182006   7 ISKSTAGSAGETGSWRILRPVVDEKKCSGCKECFYYCPEG-VIQVDV------------FARIDYRFCKGCGVCGEVCRQ 73
gi 499181656  10 ISEPMQSENLKTGDWGTHYPVVDKEKCTACKTCEQYCPDL-CIEVKEfGde-------kYAVVNYNYCKGCGICASVCPF 81

                 ....*....
gi 41033685   94 KAIEMVPET 102
gi 6685754    84 QAIEMRPET 92
gi 6685747    73 KAIKMEREK 81
gi 6686092    96 KAITMVREE 104
gi 18161530   73 KAIDMVPEA 81
gi 19913777   77 DAIEMILEE 85
gi 497675878  79 KAIDMVREV 87
gi 497676066  86 KAISMVSEQ 94
gi 499182006  74 KAIVMVPEE 82
gi 499181656  82 EAIKMELKD 90
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap