2JO6


Conserved Protein Domain Family
nirD_assim_sml

?
TIGR02378: nirD_assim_sml 
Click on image for an interactive view with Cn3D
nitrite reductase [NAD(P)H], small subunit
This model describes NirD, the small subunit of nitrite reductase [NAD(P)H] (the assimilatory nitrite reductase), which associates with NirB, the large subunit (TIGR02374). In a few bacteria such as Klebsiella pneumoniae and in Fungi, the two regions are fused. [Central intermediary metabolism, Nitrogen metabolism]
Statistics
?
PSSM-Id: 131431
View PSSM: TIGR02378
Aligned: 12 rows
Threshold Bit Score: 139.759
Threshold Setting Gi: 1171662
Created: 8-Oct-2014
Updated: 23-Jan-2015
Structure
?
Program:
Drawing:
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
2JO6_A          6 QWKDICKIDDILPE----TGVCALLGDEQVAIFRPYHsDq-VFAISNIDPFFESSVLSRGLIAEHQ-GELWVASPLKKQR 79
gi 6759824    908 SWRSVCPSTELPEKea-gSSTTILISDTQIALFRLNG-K--LYASQNMCGHKRAFVLSQGIISTDEnDNVYISCPLHKRN 983
gi 27368646   939 TWVTVAQKGDMALSelgtTSVAVKYGDTQLAVYHVPK-Rg-FYATQQMCPHRRAFVLDHGIIGDTPsGELYVSCPLHKRN 1016
gi 33521060     7 NWTAVCAVDDILPN----TGVCALIDDRHVAIFRVGQ-Se-FFAIDNVDPKSNASINARGLLGNLG-DRTVVASPMYKHH 79
gi 1171720      3 QWKDICKIDDILPE----TGVCALLGDEQVAIFRPYH-SdqVFAISNIDPFFESSVLSRGLIAEHQ-GELWVASPLKKQR 76
gi 11967670     8 TWTAVCAAEVVPEY----SGVAALLDGVQVAIFRLPG-Dr-WYALSNWDPCSGAAVLSRGIVGDAD-GVPVVASPVYKER 80
gi 585562     844 PWQAICDLDAIPQQ----AGIGARLGERQIALFRF-G-Dq-VYALDNLEPGSEANVLSRGLLGDAG-GEPIVISPLYKQR 915
gi 27358395     3 TKQFICHLNELKSD----HGHPVLLDDEQLAMFYVPK-Eg-VFAIQNWDPIGKAFVLSRGIVGDIQ-GELCVASPLYKQH 75
gi 30407679     2 NWLDICALEEINIL----GSRIINGPKGDIAIFRTSD-De-VFALDDRCPHK-GGPLSQGLVYGKR-----VACPLHNWQ 69
gi 1171662      7 TKVCIGKIEELPEQ----LGKTVYIEDKELAVFKLSD-Gs-IRAIENRCPHK-GGVLAEGIVSGQY-----VFCPMHDWK 74
gi 648204752    4 NWIDIGDISDIPLR----GARCVKTPMGKIAVFRTAE-Nq-VFAIEDHCPHK-GGPLSQGIVHGAS-----VTCPLHNWV 71
gi 19577345   931 SWQPVIEANYFSDEhpqiSSANIKRGDTQLAIFKVKG-K--YYATQQMCPHKRAFVLSDGLIGDDDaGKYWVSCPYHKRN 1007
                          90       100       110
                  ....*....|....*....|....*....|....*...
2JO6_A         80 FRLS-----DGLCMEDEQFSVKHYEARV-KDGVVQLRG 111
gi 6759824    984 YVIDadkpnAGACKNDDSLSVALFDIKE-EDGMILVKL 1020
gi 27368646  1017 FTLT-----DGTCLSDPDYEILAFEARAnDADDIEVLL 1049
gi 33521060    80 FDLR-----SGECIETPEYSVRAHEVRI-EDGRVLVAV 111
gi 1171720     77 FRLS-----DGLCMEDEQFSVKHYEARV-KDGVVQLRG 108
gi 11967670    81 FALD-----SGQCLDAADVSVPVYEVRV-REGVVEVES 112
gi 585562     916 IRLR-----DGRQCDGGEQAVRAWPVKV-ENGKVWVGN 947
gi 27358395    76 FCLK-----TGKCFEDESVKLTTWPVLV-ENDAVYVLG 107
gi 30407679    70 IDLE-----TGQAQAPDVGCAHHHSARV-ENGRVQLAL 101
gi 1171662     75 ISLE-----DGIVQEPDHGCVKTYETLI-EGEHVYLVY 106
gi 648204752   72 ISLE-----TGKALGADEGEVRTIPVRN-LDGRLSIAL 103
gi 19577345  1008 FELNge--qAGRCTNDESMNIATFPVEErDDGWVYMKL 1043
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap