Conserved Protein Domain Family
cas_csx3

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TIGR02579: cas_csx3 
CRISPR-associated protein, Csx3 family
Members of this family are found encoded in CRISPR-associated (cas) gene clusters, near CRISPR repeats, in the genomes of several different thermophiles: Archaeoglobus fulgidus (archaeal), Aquifex aeolicus (Aquificae), Dictyoglomus thermophilum (Dictyoglomi), and a thermophilic Synechococcus (Cyanobacteria). It is not yet assigned to a specific CRISPR/cas subtype (hence the x designation csx3).
Statistics
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PSSM-Id: 131628
View PSSM: TIGR02579
Aligned: 4 rows
Threshold Bit Score: 136.828
Threshold Setting Gi: 14916857
Created: 8-Oct-2014
Updated: 23-Jan-2015
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 14916757   23 TTLIEFELKRD---LVPEDLKKINPPdAVKNKFAntfIVLSGRGPIWLYGFLIHFYHPTKGIGVFDPRLGgAVVVSSHSp 99
gi 14916857   11 FTLIHFEIEKP---IKPEILKEIEIP-SVDTRKG---VVISGRGPIWLHCFLAHKYHHTPFVAVYDPRLG-AVVVQSHS- 81
gi 501543635  15 YTILSFRMEKN---LVPSALYNLSPP-NVNTRKG---LILNGRGPIWLYAFLVHFYHPTPFLAVYDPRVG-AVVIASHVp 86
gi 499751514  43 FQVIEIELTRPdrlVFPEDLAQLQLPaGINAQLG---VVLTGRAPIWLYGWLVHECHFTRWVACYDPRLG-AVVVSSHTp 118
                         90
                 ....*....|
gi 14916757  100 NKKVGDVIKW 109
gi 14916857   82 ELREGDVIDV 91
gi 501543635  87 EFRPGDVLDI 96
gi 499751514 119 EVRVGQVIPW 128
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