Conserved Protein Domain Family
tape_meas_nterm

?
TIGR02675: tape_meas_nterm 
tape measure domain
Proteins containing this domain are strictly bacterial, including bacteriophage and prophage regions of bacterial genomes. Most members are 800 to 1800 amino acids long, making them among the longest predicted proteins of their respective phage genomes, where they are encoded in tail protein regions. This roughly 80-residue domain described here usually begins between residue 100 and 250. Many members are known or predicted to act as phage tail tape measure proteins, a minor tail component that regulates tail length.
Statistics
?
PSSM-Id: 131723
View PSSM: TIGR02675
Aligned: 22 rows
Threshold Bit Score: 57.3088
Threshold Setting Gi: 28854439
Created: 8-Oct-2014
Updated: 23-Jan-2015
Structure
?
Aligned Rows:
Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70        80
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 50903771   142 LNNAFLASGASSEAASRGLEQYAQMLSAGKVDMQAWKTLQ-ET-MPYALQQTAEAFG--FAGASAQkdfyEALKNGQITF 217
gi 41583585   139 LNDAFIASGASAEDASRGLIQYTQMLSTGKVDMMSWRSLE-ET-MPYALQKVAKSFG--IASGSMQdl-ySKVQSGQISM 213
gi 29343983   149 LNNGILGFGGSAEMVENAIIQLSQSFSNGKVDAETWNSMI-NSgLGPALNALAKQMG--LTAGQMK----AGLSDGSISV 221
gi 29344069   288 LNNAILAGGMSREIQSSALEQISQSYSKGKPDMIEWRSLL-TA-MPAQVDQIGKSFG--LTSDQLG----EALRNGNISM 359
gi 46449317   242 VSQAGAALALSQDDMNGVFIALSQMMSKGKVQAEELRGQL-GErLPGAFNLAARAMG--VTTAELD----KMLEQGQVLA 314
gi 24346198   353 IVDQAFKLGGGFQEVEGITLALGQAWAKQKLQGEEILQLI-ERgVP-VWDMLAKVTG--KNSLELE----KLSSQGKLGR 424
gi 56910831   140 IGDAAAGAGKGSEGLNMIASAFGDIQVAGKLGMDQINRLA-SNgVP-ALQILANQAG--ISAEEMR----KKISDGSIGA 211
gi 1175875    144 LVDYNAKVGGDKANLDGYISAISKGFIKGKLSMEEINPLL-ERnVK-VFEILAKETGgkYTADQMQ----KMLQEGKLGR 217
gi 499207846  370 FVNLGRATGKSDDAMQNIITKFTQMNASGEITSGSITKME-KT-LPGFAKTLATTMG--VSRDKLN----ELANNGKISM 441
gi 488156357  339 LVDSVARFGGDSELLKRAAVAVQQMSGKGVVSMEELRQQLgEA-VPNAMKAMADAAG--ITMGELT----KAVSTGTVEA 411

                  ...
gi 50903771   218 DQF 220
gi 41583585   214 KQL 216
gi 29343983   222 EEF 224
gi 29344069   360 DQF 362
gi 46449317   315 DDL 317
gi 24346198   425 DVI 427
gi 56910831   212 EEA 214
gi 1175875    218 KAI 220
gi 499207846  442 SDL 444
gi 488156357  412 KQA 414
| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap