Conserved Protein Domain Family
TrbC_Ftype

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TIGR02742: TrbC_Ftype 
type-F conjugative transfer system pilin assembly protein TrbC
This protein is an essential component of the F-type conjugative pilus assembly system for the transfer of plasmid DNA. The N-terminal portion of these proteins are heterogeneous and are not covered by this model.
Statistics
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PSSM-Id: 131789
View PSSM: TIGR02742
Aligned: 9 rows
Threshold Bit Score: 159.478
Threshold Setting Gi: 16445279
Created: 8-Oct-2014
Updated: 23-Jan-2015
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 53755707   85 AVLFVSFSMPEPLLFSLSDEAAAYKIPVVINGLIEGDFKKTITVFSKLHAKAKEskwafNGVSIDPLWFEQFHITAVPAL 164
gi 37201918  105 VMVFVSLTMPENALKQLLMQSEHLGVPLVIRGVLTDGFPATAKRIESLIRSPNKap-ikSGFSISPDWFKQFGITKVPAF 183
gi 319999654 104 VMIFVSLTMPKSSLQALLKQSEIWQVPLVIRGVLPDGFMTTVNNIQSLLQTNEKkp-inSGFAISPEWFQTFNILEVPTF 182
gi 46911601  103 VIIFASLTMPSTALKQLMMQSSDLQVPIIIRGVLPQGFPATVAAIQSLIHSEDDev-inSGMAINPLWFKQLGIQRVPAF 181
gi 52629409   91 VLVFLSFSMPEKSLKAWLLQCKKSGATPVIRGLIHNSFKETMTAIQTLSKKTG------IGMQLDPILFKTFDIAMVPAV 164
gi 56315265  117 LLVFVSLSMPQPTLQRLIDQAARAQASIVLRGFADGSLRTTVARVQRLIGDRQ------VAVQIDPQAFDRYAVTRVPAF 190
gi 56315730  122 LMLFVSFSMPPDVIREYSRQAQAAGATLVLRGNYKGGTVRRTTEQAGALNAGG------AGWIINPEVFTGYKIDAVPAL 195
gi 16445279   92 AVYFISFSIPEEGLKRMLGETRRYGIPATLRGMRDNDLKATADAVLSLVKDGAT-----DGVQIDPTLFTKYDIRSVPTL 166
gi 46400708   79 LYVFMSFSLDDRLWVQLSQELEKLGGIFVLRGLPQNSFKELANRIFTLQEQGVR-----VPIQIHPQLFQRFDIQLVPTI 153
                         90       100       110       120       130       140
                 ....*....|....*....|....*....|....*....|....*....|....*....|
gi 53755707  165 VVSKRPs---SCGQQLICPEQTYDVVYGNASIKNSLQLIAqKGDSANe--VAQALLENTH 219
gi 37201918  184 VSVKPG----RCLPEQPCAATDYDILYGNISLYQALDYLA-DGDAQQ---NVHPLLHTLY 235
gi 319999654 183 VAVKPG----RCLPKQPCSESDYDIVKGNVSLPNALEHLA-NGDNPD---VVRQVLQRIK 234
gi 46911601  182 AVIKPG----ACLPQQPCQDSDFDVLVGNVSLYDALATLArDGDVPN---IAQQVLSRRK 234
gi 52629409  165 VYVKDTp---ACPANMDCKPVSYDSLYGDVSLDYALEKMRgDEQSEDp--VLDQMILRLR 219
gi 56315265  191 VLVRDGarpvACAGGSCAPSEIFLRTSGDVSLDYALEYMQrSAPGFGs--AADTFLKRIR 248
gi 56315730  196 VLSRDNl---NVDDEGCFPVGEYASVFGDISIIGSLEKISqSATKPEirqLAAKRLAMIK 252
gi 16445279  167 VVYCRQg---------------YDVIRGNLRVKQALEKVVtAGDCRQ---VAAGLLDGAG 208
gi 46400708  154 AVTEGEq---------------YDKISGNLSIQGALEKMSlYGETQRakfLLQQWKEQQK 198
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