Conserved Protein Domain Family
chlamy_scaf

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TIGR02763: chlamy_scaf 
chlamydiaphage internal scaffolding protein
Members of this protein family are encoded by genes in chlamydiaphage such as Chp2, viruses with around eight genes that infect obligately intracellular bacterial pathogens of the genus Chlamydia. This protein, initially designated VP3 (as if a structural protein of mature viral particles), is displaced from procapsids as DNA is packaged, and therefore is described as a scafolding protein. [Mobile and extrachromosomal element functions, Prophage functions]
Statistics
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PSSM-Id: 131810
View PSSM: TIGR02763
Aligned: 3 rows
Threshold Bit Score: 143.586
Threshold Setting Gi: 139220
Created: 8-Oct-2014
Updated: 23-Jan-2015
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 7190961   32 INNIVAKLN-ATGVLEHVE---RRSPRYMDCMdPMEYSEALNVVIEAQEQFDSLPAKVRERFGNDPEAMLDFLSREENYE 107
gi 29834827   2 RIIIAAKVN-AVSVLRRLE---QRSLCHVVCC-PIDCFEALNAIIEVWELFDALPAKVRECFGNDPEEMLECLNYEDKYF 76
gi 139220    34 IEKLVKLANqNPSYLHAFAgdpTRQPEYGECPsPLDYQDALEIVARGEEAFYSLPANIRVNFSN-PMEFLSWLEDPANYD 112
                        90       100       110       120
                ....*....|....*....|....*....|....*....|....*..
gi 7190961  108 EAK---------ALGFVYEDGTSGAPQTFFEADPKDDQNVANQEPGL 145
gi 29834827  77 NNLenpsksvslASQILKTETKIRAIMMRIFVQRKRLKLASKKTEDF 123
gi 139220   113 EVE---------KLGLLDPE----------KVQIRKSKLQKDQKEEV 140
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