Conserved Protein Domain Family
TraF_Ti

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TIGR02771: TraF_Ti 
conjugative transfer signal peptidase TraF
This protein is found in apparent operons encoding elements of conjugative transfer systems. This family is homologous to a broader family of signal (leader) peptidases such as lepB. This family is present in both Ti-type and I-type conjugative systems.
Statistics
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PSSM-Id: 131818
View PSSM: TIGR02771
Aligned: 7 rows
Threshold Bit Score: 178.057
Threshold Setting Gi: 50878033
Created: 8-Oct-2014
Updated: 23-Jan-2015
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                        10        20        30        40        50        60        70        80
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56315930   4 LFKKISvGVALAGAAGLTGAALaYSVGARINTTRSIPVGLYW--TSPSLAVEKGAYVLFCPP-HLQVFNEARERGYIGAG 80
gi 46916717   1 MKAFKL-SMIGLALFITLILSL-FAIGLRWNESTSYPKGVYQ--LTSSTDYPRGTLILFCPP-DNPALQMALERQYLRFG 75
gi 56315261  38 LYLPVL-AIWGLAYVRLFIDAT-PRLPVLFNWTPSLPYRVALl-VEDAGELHRGDYVVFAFD-GRAQADYPGLRGQ---- 109
gi 46400706  11 LCISLLiGINAYGLTNLATEGT-YCQHFRLNSSSSLPFYIFS--TSSLKMVERNMYVSLTHP-FSSQ------------- 73
gi 2499034    5 AVIRFL-GVAGLVLSGATVMGL--IGGYRVNVTPSEPLGL-WrvEKLRRPVQSGDLVFVCPP-HNAFFEEAWLRGYLRSG 79
gi 9107176   10 AVLVVV-GIFGIAASGVMCL-----VGARVNTSKSIPIGLYW---TSSAPVTKGKYVIFCPP-QRTVFDNARKRGYIGPG 79
gi 50878033   4 LIFFCL-SILLIIFIGNEFCY--------INITKSLPLGIYR---TIKSPPTYGSCVVFKLPeDNPMAELAIRRGYAKED 71
                        90       100       110       120       130       140       150       160
                ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 56315930  81 FCAGGYGYLMKRVLAAKGDDVAVsADGVRVNGVLLPFSAPKAVDAGGRPLPRF-H-ATRYILGaaeLLLMSDMSG-TSFD 157
gi 46916717  76 LCKGGFEPVIKRIVGIGGERVTF-TDVISINQQQLPNTHRLQHDGFNRPLPQL-D-NFTLPDKt--FFVISDHKPaSSFD 150
gi 56315261 110 -------PFFKIVRGLPGDAVTVrGRVVAINGMTVGVAKAHAHDR--RPLAPI-A-PTVIPPG---YFYVQGTSP-DSFD 174
gi 46400706  74 -------ELLKQIVGLPGDLITIrDQHVWVND--KDYGFIYSTSPSGLALSPL-P-EGIIPQG---FFFVHATHP-QSFD 138
gi 2499034   80 LCPGWFAPLIKSVLALPGQRVEI-ADRIVIDGHPVSASTVSATDSEGRAIAPF-A-GGVVPPG---FLFLHSSFA-SSYD 152
gi 9107176   80 FCPGGYGYMMKKILAAKGDTVSVtPQGVAVNGKLLPYSKPLLVDGVGRSMPRM-S-DERYTLGeseLLLMTDRSS-TSFD 156
gi 50878033  72 Q------PFLKRVAYLEGDSYNL--------------PETEEFDSRGRKMEPFkPsSGYVAKG---MIVVRGDSS-TSFD 127
                       170       180
                ....*....|....*....|....
gi 56315930 158 GRY--FGPINRSQIVTVVSPVITW 179
gi 46916717 151 SRY--YGAIPRGNVIGRIKPLFLL 172
gi 56315261 175 SRYaaSGLVRADQVIGRAVPLF-- 196
gi 46400706 139 SRYaeFGLVSKEQLKERLCPLF-- 160
gi 2499034  153 SRY--FGPIPDSGLLGLARPVFTF 174
gi 9107176  157 ARY--YGIISREQVKSVIRPVLTW 178
gi 50878033 128 SRY--FGPIYAKNIEAIVKPLLTW 149
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