Conserved Protein Domain Family
HAF_rpt

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TIGR02913: HAF_rpt 
probable extracellular repeat, HAF family
The model for this family detects a homology domain of about 40 amino acids. Member proteins always have a least two tandem copies and as many as seven. The spacing between repeats as defined here usually is four residues exactly. This repeat is named for a tripeptide motif HAF found in most members. Some members proteins are found in species with no outer membrane (archaea and Gram-positive bacteria) while others have C-terminal autotransporter domains that suggest that the repeat region is transported across the outer membrane. This domain seems likely to be an extracellular protein repeat.
Statistics
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PSSM-Id: 131959
View PSSM: TIGR02913
Aligned: 25 rows
Threshold Bit Score: 47.2175
Threshold Setting Gi: 341580088
Created: 8-Oct-2014
Updated: 23-Jan-2015
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 17135562  237 AFAINDLGQVV-GASWDINLQ--THAFRTAPNSsINpntdDLGTLGG 280
gi 8979173   289 AKGVSATGKVIvGMSTTANGK--LHAFKYVGGR-MI----DLGEYSW 328
gi 33236668  264 ATGVSRDGKVIvGHSTRTDGE--YRAFKYVDGR-MI----DLGTLGG 303
gi 7189989   254 ASAISTDGTVIvGGSENADSQ--THAYAYKNGV-MS----DIGTLGG 293
gi 341580088  25 AYGVSADGRFIvGT-EFTSGN--QYAFKYSDATgMV----NLGTLGG 64
gi 341580088  69 AKAVSADGKVVvGFAALSSNH--THAFKHTDATgMV----DLGTLSG 109
gi 341580088 115 ATGVSADGAVVvGYSSATNSY--YRAFKHTDAKgMI----DLGTLKA 155
gi 341580088 163 ATAVSANGSIVvGYANIDSSTglKHAFKHTDASgMI----DLGTLGG 205
gi 341580088 210 AFGISADGHVVvGTAQTATGD--TQAFKHSDTTgMV----GLGSWGG 250
gi 341580088 254 AYGASADGRVVvGTAATATGD--PHAFRHTDASgMV----DLGTLGG 294
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