Conserved Protein Domain Family
penta_MxKDx

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TIGR02953: penta_MxKDx 
pentapeptide MXKDX repeat protein
Members of this protein family are small bacterial proteins, each with an N-terminal signal sequence followed by up to 11 imperfect repeats of a pentapeptide. The pentapeptide repeat usually follows the form Met-Xaa-Lys-Asp-Xaa.
Statistics
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PSSM-Id: 131998
View PSSM: TIGR02953
Aligned: 10 rows
Threshold Bit Score: 48.6884
Threshold Setting Gi: 27352694
Created: 8-Oct-2014
Updated: 23-Jan-2015
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 35211719   22 NLLMAAALALSVpaaFAAQPILLAQagDAMKGDAMKgdamkGDAMKKsDAVKKsDAMKGDAM-KGDAM--KGDAMKGDA- 97
gi 77966548    2 KKVLIAACVAAF---ATIATGAYAQn-DAMSQPGSSm---sKDAMGH-DAMAK-DAMGHDAM-KKDGM--KKHAMKKDA- 68
gi 52209341    3 RNLIAFACVAGF---ALAAPFAHAQn-DAMSKDGMGm---sKDAMSK-GAMSG-DAMSKDAM-SKDRMgkRHDHMAKGG- 71
gi 39649463    4 TRIVLALMIAAFsssLAMAPAAYAM--DKMEK---------KDGMAH-DSMAK-DSMSKDGM-KKDTM--AKDGMKKDG- 66
gi 27352694    5 TRIALGVSVAALslgLALSPAAFAQ--DKM-----------GDKMGKeDGMMKkNTMSKDGM-KKDAMt-KDDGMKKDH- 68
gi 71847828    2 KTITSSIFAACL---MLVGSSAFAD--DMMKKDAMSndgmaKDGMKK-ETMSK-DHMAKDGM-KKDAM--TKDGMKKDA- 70
gi 11121511    2 NKIAAILLSIGF---LSIADGALAQ--DGMKKDTMA-----KESMAK-------EAMTKDDM-KKPTM--GKDAMAKDG- 60
gi 17427632    3 KRLVLLISAGMF-----LAGNALAQ--DTMKKDEMG-----KDAMGQsGSMAK-DTMGKDHK-SKSH---TKKMHEKGG- 64
gi 159140689   2 TRIFTAIATASLfsvLSFAGIAHA---DSMKTDTMK-----KDTMHS-DMMKA-ETMKKDGM-SMTS---KKDCMHKAG- 66
gi 17984199   14 KHNIIAFSALALiagFSLTPAAFAE--DAMKTDHMK-----SDAMKS-------DNMSKDAMgKEDAM--KGDAMHKDSk 77
                         90
                 ....*....|...
gi 35211719   98 -M-KGDAMKGDAM 108
gi 77966548   69 -M-KKDAMSHDEM 79
gi 52209341   72 -M-KAGPMSKDAM 82
gi 39649463   67 -M-SKDSMSKDQM 77
gi 27352694   69 -M-SKDGMKKDDG 79
gi 71847828   71 -M-KKDGMAKDPM 81
gi 11121511   61 -MmKKDGMKKGAM 72
gi 17427632   65 -M-SKDAMGKDAM 75
gi 159140689  67 -M-QKDKMKKADM 77
gi 17984199   78 kMkKHDAMKGDAM 90
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