Conserved Protein Domain Family
VPLPA-CTERM

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TIGR03370: VPLPA-CTERM 
VPLPA-CTERM protein sorting domain
A probable protein export sorting signal, PEP-CTERM, was described by Haft, et al. (). It is predicted to interact with a putative transpeptidase we designate exosortase. This model describes a variant with conserved motif VPLPA, rather than VPEP. It appears to be the recognition sequences for exosortase D (TIGR04152). This variant is found prominently in two members of the Rhodobacterales, namely Jannaschia sp. CCS1 and Roseobacter denitrificans OCh 114. One interesting member protein has a full-length duplication and therefore two copies of this putative sorting domain.
Statistics
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PSSM-Id: 132413
View PSSM: TIGR03370
Aligned: 24 rows
Threshold Bit Score: 27.4794
Threshold Setting Gi: 110680512
Created: 8-Oct-2014
Updated: 11-Oct-2014
Structure
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Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20
                 ....*....|....*....|....*
gi 499773904 220 IPLPASALLLLGGLAALPVMRRRRG 244
gi 499775728 259 VPLPAGLPLLLAGLGVFGVMGGRRK 283
gi 499775778 179 IPLPAALPLLLGGLGGLALLRRRRQ 203
gi 499775060 180 VPLPASLPLLGVGALALGVVARRRR 204
gi 499773523 169 VPLPASVGFMLLGLAGLGTVAARRR 193
gi 499774460 204 VPLPASLGFLALGLGGLAAVRRRAR 228
gi 499886939 162 VPLPAAAWMLIAGLGGLAAFGRRRK 186
gi 499774207 168 VPLPAAGWMLLAGLGALSLHRRRAC 192
gi 499735590 165 VPVPAAVWLLGTGLIGLVGIRRRMV 189
gi 499773518 198 VPLPAGIWLLLASLAGMTGLRRLSA 222
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