Conserved Protein Domain Family
Soli_TIGR03435

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TIGR03435: Soli_TIGR03435 
soil-associated protein, TIGR03435 family
Bacterial reference strains encoding members of this protein family are all isolated from soil. These include 39 members from Solibacter usitatus Ellin6076, 27 from Acidobacterium sp. MP5ACTX8 (both Acidobacteria), and four from Pedosphaera parvula Ellin514 (Verrucomicrobia). The family is well-diversified, with few pairs showing greater than 50 % pairwise identity. A few members are fused to Peptidase_M56 domains (see pfam05569), to Sigma70_r2 domains (see pfam04542), or have a duplication of this domain.
Statistics
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PSSM-Id: 132476
View PSSM: TIGR03435
Aligned: 34 rows
Threshold Bit Score: 245.273
Threshold Setting Gi: 116623465
Created: 8-Oct-2014
Updated: 11-Oct-2014
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500001107  21 LSFEVASVKPGG-PMdpaaiMAGKMRIGMKIDAARVDIGMLSLSDLIRIAYKVKS----YQ-IQG--PEWMTAERFNISA 92
gi 500004284  16 QQFEVVSIKPAD-PNe----HGSSGRTT----PGTFEMHNTTLKTLVRAAYALNE----YQ-LEGg-PKWLDSERFNLVA 80
gi 500004868  36 PEFEVVSVKPA--PP-----TLKGVSSRESVDNGLLTYTNFTLRRLVSNAYEVTE----GQ-IVG--PEWISDNLYHINA 101
gi 500007183  22 LAFEVASLKP-T-PL-----GFSGSSAFVPSAGNNLSLRGMSLRDMIQLAYTLSS----DL-VGGg-PAWVDGSRYDVEA 88
gi 500006521 343 PAFQAASIKPNT-A------ANPRGRMVRPQPGGRLTSENAPLLMLIQNAYSLQA----FQ-VAGg-PEWINTTGYDIEA 409
gi 500005824  18 AEFEVASVKPNTsAR-----AGSDFNRT---PGGGLHAINVTLREMILFAYEIRD----QQlIGG--PAWMGSDRYDVMA 83
gi 500003776  70 PKFELADVHSSK-TS-----HSAAQNFGGVLRAGKYVNRDVTMLGLIEAAYKVKE----DA-IAGg-PGWVASDLFDIVA 137
gi 500003776 322 PKFEAASIKPAT-P--------DNQMTGLLYQGGSMMRAGGTLRNLISMSLQVSPnfgkDI-VVGl-PKFADETHWEINA 390
gi 500004161 287 tEFDVAEIKPSV-TP-----PGGPGSARPEIKNGRIYLPGIGLKNLIALAWDING----DE-LMAnaPKWLDSERFDVIA 355
gi 500004161  27 AKFDVADVHSS--PR-----TTQPFARGPFYNGGRYELRFATMLDLIHTAYGVDP----EK-VIGg-PNWLEMDRFDVFA 93
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500001107  93 KL-----P---DGA--------------K-----------ED------QVPEMLQTLLAERFKLAIHRQSKEQNVYALIV 133
gi 500004284  81 KF-----P---QAV--------------P-----------RD------QTLHMLQAMLADRFHLEIHRVTKTLPEFALVI 121
gi 500004868 102 RL-----P---AGG--------------N-----------SS------DVPAMLQGMLADRFKLVVEHATKKIPVYALVI 142
gi 500007183  89 RA-----E---GKA--------------S-----------QQ------QRLEMLKTLLAERFKLTFHYESKEASTYVLMA 129
gi 500006521 410 KP-----E---GTV--------------D-----------RP------PMWLMLQTLLADRFKLALHRETRELPLYALTT 450
gi 500005824  84 KPsqndnP---AGA--------------K-----------RSfdedfrGIRLKMRALLADRFQLAIHRETRDMPIYTLVA 135
gi 500003776 138 KV-----P---EGT--------------K-----------MA------EANQMLQSLLADRFKLVVKRETRPVPRYVLAV 178
gi 500003776 391 KV-----PttgEGA--------------PnvvngrplpppLS------IGLEMLNNLLIDSFGLKTHREQREITVYVLTA 445
gi 500004161 356 KA-----P---AGVaigdltpsrtavpvN-----------ID------ALRPMLRALLIDRFQMKVHMEDRPVAAYTLVA 410
gi 500004161  94 KA-----P---AGS--------------S-----------TE------SRRRMLQALLAERFQLVVHNDSKPIPAFGLKA 134
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500001107 134 AKGGPKMKPAEPED----------------------PKA----DPVPAAagirmsgdiqGKGMvvaggangnqtkmtmnN 187
gi 500004284 122 AKGGPKLQEASGED----------------------R-------DRQSS----------SQGD----------------R 146
gi 500004868 143 AKGGQKMKPVVNDD----------------------NGY-----------------------G----------------G 161
gi 500007183 130 GKNGSKMKARQPGD-----------------------SG----EPSGIR----------DTG------------------ 154
gi 500006521 451 GKNGFK-PPAPKEGvcislppdappgpalpppgslaQCG----KVRINL----------SPAG----------------- 498
gi 500005824 136 AKNGPRLDPSKSED----------------------LRI----NNRRGL------------------------------- 158
gi 500003776 179 AKGGSKLKPASGSG----------------------QGC----KPVQQP----------GGGR----------------G 206
gi 500003776 446 GKGKPKITAAKDSDrt------------------scRPA----PNATPP----------MPGL----------------R 477
gi 500004161 411 AK--PKLKQADPNSrt------------------kwQEG----AATDSK----------DKNA----------------N 440
gi 500004161 135 GKR-PLLKETEGAG----------------------SGCnftvENTTPP----------PAGGgppq--------gpinL 173
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 500001107 188 GM------M--HMENSKLPITGLVE-ML----S------R----FVDKPAVDMTELKGEYQVGIDLSME--------D-- 234
gi 500004284 147 -----------MIKGRGMPVASLAE-ML----I------S----AVGAPVVDRTGLTGKYTFSLAFAPL--------Q-- 190
gi 500004868 162 GI------R--RIDGRGTTMGTLAK-LLs---S------R----ATDRPVIDSTGLGGKFAFSLVWAEE----------- 208
gi 500007183 155 -S------L--HYVCRDTTMAWFAR-YLe---S------T----VLSRPVADKTGLTGAYDFDLAWRPD--------D-- 201
gi 500006521 499 --------L--KMEGGKVQMAELVR-ML----A------A----AMGRPVLDRTGFTGEFDVNLSFTPDqstmglpgA-- 551
gi 500005824 159 ------------VICKKVTMKAFAEsSL----T------Y----RMGRTVVDKTGTSGEFDFELKFRED--------Q-- 202
gi 500003776 207 SDlaslpnI--IVECQNMTAAEIAD-NLhqmaG------G----YFDHDLTDDTKLSGSFDFKLEWT------------- 260
gi 500003776 478 MT-----------GCTNTSMAELAE-NL----Q------RmapaYIDHPVVDETGIEGGWNFFIGWTPRpm-----lQ-- 528
gi 500004161 441 SS------LgrLVTCQNVTMAQFAE-LL----P------GiapgYLRTQVVDGTGLEGGFDFTFSFSPA--------Glf 495
gi 500004161 174 PV------I--VYTCKNTTMATFADgML----SmpgagqY----FQNRLVVDQTELGGAWDFTLRFTPK----------- 226
                        330       340       350       360       370       380       390
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....
gi 500001107 235 --------LrnvARASGMGGAMMlagagpapggapAEASDPtsSIFTSVa-QLGLKLEPRKLPIDLIIVDHLEKLPTDN 304
gi 500004284 191 --------G---TPRDDEPL--------------------P--TIFTVLqeQLGLKLEAIKGPVQVVVIDRAER-PAEN 235
gi 500004868 209 -------------------------------------PDDP--SIYIAVqeQLGLRLVPRRMPIHVITVLRAERNPTGN 248
gi 500007183 202 --------D---QFKGRFAGSRE------------AQSDLP--DLFAALk-EIGLRLETIKSPVQFLRIDHAEK-PSEN 253
gi 500006521 552 --------G---GPRDMGGPQLA------------TDPDRP--TIFAALqeQLGLKLVTAKGPVEVLVIDHVER-PSEN 604
gi 500005824 203 --------D---V-----------------------DSTDP--DFLTAMreQLGLVLHSEKGPVEVIVVDDAKKA-SAN 244
gi 500003776 261 ----------------APVALVA------------KGAGGI--SVFDAVekQLGLKVELKDVPMPALVIESLNRKPTAN 309
gi 500003776 529 --------Q---VDNSNQPLGAA------------TDPTGI--SLFEALerELGLKLVKQTRMYPVIVVDHIAEKPVE- 581
gi 500004161 496 qvnqgrseD---SGAAAGPVPEA------------SLPSGAl-SLFDALtkQLGLKLEMQKRPTPVLVIDHINQKPTDN 558
gi 500004161 227 -----------------VPAGLA------------TVGENI--PLFDALekQLGLKLEPATIPMPVITVDSVNRKPTEN 274
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