Conserved Protein Domain Family
Na_symport_sm

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TIGR03647: Na_symport_sm 
putative solute:sodium symporter small subunit
Members of this family are highly hydrophobic bacterial proteins of about 90 amino acids in length. Members usually are found immediately upstream (sometimes fused to) a member of the solute:sodium symporter family, and therefore are a putative sodium:solute symporter small subunit. Members tend to be found in aquatic species, especially those from marine or other high salt environments. [Transport and binding proteins, Unknown substrate]
Statistics
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PSSM-Id: 132686
View PSSM: TIGR03647
Aligned: 34 rows
Threshold Bit Score: 67.9918
Threshold Setting Gi: 17545267
Created: 9-Oct-2014
Updated: 11-Oct-2014
Structure
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Aligned Rows:
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
gi 491679991  42 PFMRDHLKIIWSSFVLWALVVFGpvtLTALAPEMMTVQTpLF-GFPLHYFLVSFGAPTGALILAVVYTRYRDRLDQKYGI 120
gi 501541130   9 AYWRDNRILMYVILLIWFAVSYL---AAI-FASSLNSIT-IL-GFPFGYYMGSQGSLIVFVLLNYFYSMKMNELDKKYGL 82
gi 499803217   9 RYWRKNLVLTAALLLIWAVVTFG---VSY-FARAL-SFR-FF-GWPFSFWMGAQGALLVYCLIIGVYAWYMNHLDVKHGV 81
gi 499615979  13 rsWQRNRRWICALLAVWFVVTFV---VSW-FARDL-RFD-FF-GWPFSFWVGAQGALVVYVLMTALYAWRMNRADDEADt 85
gi 499509806  11 qHFRANLGLAVKLLLVWFLVSIG---AGAV-TEWLDQFR-ILtGFPLGYYMGAQGAQITFVILIFIYAFRMRAIDQKYGV 85
gi 499804292   9 eYWSKNLRITAILMGIWFFVTFV---MTY-FAREL-TFS-FF-GWPFSFWVAAQGALVVYCVIIWFYARYMNNLDNEYGV 81
gi 499643534  58 PFMRDHLRVIWLGFGIWILTTFGpvtATRLAPELMTSQMpLI-GFPLHYFLIAIGGPSAALILSVWYARKRDQIDEKYGI 136
gi 489910629  14 PYWRRNVRLIVLLLACWAGLTFV---PAY-FARQL-AFD-FI-GWPFSFWMAAYGAPLAYLILIVIYALVMNRFDARsrt 86
gi 499671913  25 RYWRFNVALIAVLMVIGFSVSFI---VPF-FAPALAGIR-FA-GFSLPFYVGAQGAILVYLVLIVVYIGLMQRADRtlrr 98
gi 499202329  11 AYFRARTTLVVICLLIGGLVSFA---V-VAFAEAFSTFT-IL-GMPAHYYMGAQGSVVTFVVLLFVNAYVSDKIDEKFGI 84

                 ..
gi 491679991 121 DS 122
gi 501541130  83 EE 84
gi 499803217  82 AD 83
gi 499615979  86 gv 87
gi 499509806  86 DE 87
gi 499804292  82 AE 83
gi 499643534 137 EQ 138
gi 489910629  87 rr 88
gi 499671913  99 ay 100
gi 499202329  85 DE 86
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