1JWL,1LBI,3EDC,2P9H


Conserved Protein Domain Family
PBP1_LacI

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cd01574: PBP1_LacI 
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ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators
Ligand-binding domain of DNA transcription repressor LacI specific for lactose, a member of the LacI-GalR family of bacterial transcription regulators. The ligand-binding domain of LacI is structurally homologous to the periplasmic sugar-binding domain of ABC-type transporters and both domains contain the type 1 periplasmic binding protein-like fold. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the type 1 periplasmic binding proteins. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Statistics
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PSSM-Id: 380488
Aligned: 98 rows
Threshold Bit Score: 230.546
Created: 21-Jul-2004
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Conserved site includes 11 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1           #     ##  #                                             #                 
1JWL_A     63 LIGVATSSLAlHAPSQIVAAIKSRAdqlGASVVVSMVersgvEACKTAVHNLLAQRVSGLIINyplddQDAIAVEAacTN 142 Escherichia coli
KUH57609   58 SIGLVIFDLF-GGNLSVLNGIASAAadqGYAITLIKRmskeeLPLSEAARRMGQLPVDGMIFNla-qmVDDFAEYRspVG 135 Olsenella sp. SK9K4
EGX67057   66 ALGIAMGNISeTGNRDRLEMFVDAAaaqGYTIALLKMdreepLSLGQAADRMSSLSIDGMIYVln-rtPEDFDTFVprAG 144 Collinsella tanaka...
OZG59236   68 MIGMVVKFYRnNDLADVLEGVSRQVsklGYGIMMIPVdndasETLSGNARYILSLNLDGMIVFsd--dDISDESAEelSH 145 Bifidobacterium sp...
OUO21347   58 AVGLFMPDLMyAGNLATLNGLMAAAaerGYAVTLADQpnaaeRSLTRESRQMAALPVDGIVINms-qkTADFDEFVplPG 136 Collinsella sp. An307
SHI28794   72 RLLVLSSGLArTGYWATLSGVLEAAqehGADLSIHVLsa-spARRREALLQALGTRLDAVVVLef-dsLGLAALHDlpEG 149 Actinomyces dentic...
KFI93710   94 TLGLFVERLEtSGSELMLESLMDAAakrGYGLTLIPIgndaqVSVIASSPFVASLDVDGMIVNdr--pAVAEAIDQffPD 171 Bifidobacterium sc...
OJX96140   58 TVGVLTADLAlYGPAQLVQGVEEAArarGYFTSIAGIastpsSGTDEILERFFAQRFDAVILLdv--nDQLLARTSglSG 135 Micrococcales bact...
AJC70053   58 TLGVITQNLGrTGESLITAGIAAEAeerGYSVSLRQIshpgtEELTQAGSYFSHHTVDGLIVVq---aGSATIPHSlsHG 134 Trueperella pyogen...
NP_696340  66 DIGVVMFNTAtFGNARILDSIVANAaddDYSVTIQTMrhgaeRTLSAAIDRMQRQPVDGVIVVle-erISDFVGYKppRE 144 Bifidobacterium lo...
Feature 1           #              #                               #   #                      
1JWL_A    143 VPALFLDvsdq---tpinSIIFSHeDGTRLGVEHLValGHQQIALLAGPlssvSARLRLAGWHKYLtr-nQIQPIAEREG 218 Escherichia coli
KUH57609  136 LRTVIITpfeh---atcsTVSDDQeGAARAACRRLIelGHRHIRFIAGTsdslASKNRERGWRLALde-aGLAAADPLHG 211 Olsenella sp. SK9K4
EGX67057  145 LPEVIISmhdh---pvcpTVDSDQeASARAVVNYLVerGHTKIWHISGPsrslASVARESGWRSAMld-nGIEPPRVIAG 220 Collinsella tanaka...
OZG59236  146 IPTVVMGaltrf-pawwsYVDMLEgRISELVVDHLLslGHRTVCHIAGPlsfpASVRRVEAWRAALerhgAPVPQYVESE 224 Bifidobacterium sp...
OUO21347  137 LKTVIVGalph---prctTVDSDHyGAAVMAVEHLIvhGHRQIRHIAGPvdsvPAEQRERAWRDMLer-hGLPVVDPCCG 212 Collinsella sp. An307
SHI28794  150 LPLAVAGgyphpddgglkRAWTDDhAGAVMACEHLLglGHTRVAYVGVPsa-gHPDPRLAGWREVMag-aGLEAPEPVAT 227 Actinomyces dentic...
KFI93710  172 TPVVSIGknpdr--enwsSMDLDQeLIGRLAVEHLLdlGHKTVYHVGGEqisnSAIKRAQSWEQVLre-rGCEVPPFEYA 248 Bifidobacterium sc...
OJX96140  136 TRHVISAplgs----thdDFWQHDrTAVREATEYLIslGHTRIAHIGGPsmwpSARERERGWRDALda-aGLPAIPVVRS 210 Micrococcales bact...
AJC70053  135 TPTVVSDsrfi---nnfsSAVTDQvQGTRLVVEHLLdlGHTRIAHIAGPtespSANIRQTVWQSTLee-aGLPLGPIMYG 210 Trueperella pyogen...
NP_696340 145 FPVVLICesaa---dhcpTVDADQyGCSTAIVDYLMskGHKTVYHIAGPstsrAAESRARGWREALeq-mGARVPSMYIG 220 Bifidobacterium lo...
Feature 1                                  #                           #                      
1JWL_A    219 DWSAMSGFQQTMQMLNegi--vptAMLVANDQMALGAMRAITESGlrVGADISVVGYDDTedss-----cyiPPLTTIKQ 291 Escherichia coli
KUH57609  212 DWSADSGYEAGATLAQdqk---ctAILACNDNMANGAMQALNDAGrrVPDDVSIIGFDDSladsvphtilssPSASTIRN 288 Olsenella sp. SK9K4
EGX67057  221 DWSPESGYAAGVLLADkvrsgactAVFASDDAMVYGCMCALSDAGisVPDDVSLVGADDIsstf-----vpnSRLTSLHF 295 Collinsella tanaka...
OZG59236  225 DWMPDEGYRAAVRLLDmyp--dctAVFASDDAIASGAMKACRERGleISRDVSIVGVDDVlgyf-----vpgNVLTSVRR 297 Bifidobacterium sp...
OUO21347  213 DWSADDGYELGCRLAEdrs---atALFAANDQMAYGAMLALRERGvrVPEDLSVIGIDDSlegv-----vphNMLTTVRL 284 Collinsella sp. An307
SHI28794  228 GWGTTTGERAAAALTRsg----atAVLCGNDDLAIGLLSGLARAGarIPDDISVVGVDDHphas-----attPPLTTVRL 298 Actinomyces dentic...
KFI93710  249 GWWADDGYHVGKKLAEdpn---ctAVFCANDTLALGVIKALQESGlrVPEDVSVVGVDDSvngy-----ypnNNLTTVSQ 320 Bifidobacterium sc...
OJX96140  211 TWSAEGGSSAGEELAAnga---vtAVVAASDDIALGAISALTRRGrrVPDDVSVIGFDGTpssa-----ffiPSLTTVSC 282 Micrococcales bact...
AJC70053  211 NWSAQSGYKAALALAEksh---vtAIFAANDEMAFGAMRALYEKGvrLPADISIAGFDDIalae-----ysvLPLTTVRQ 282 Trueperella pyogen...
NP_696340 221 DWCADSGYQAGVALAHdpd---ctAIYAANDQMAYGAMLGLQSAGkrVPEDVSIVGVDDSlvdm-----vprLNLTTMKL 292 Bifidobacterium lo...
Feature 1                                                          
1JWL_A    292 DFRLLGQTSVDRLLQlsqg----------------qavkGNQLLPVSLVKRKT 328 Escherichia coli
KUH57609  289 SAQGPSKRSSTLLMRstafssparssseaaygpdhrsktTETKRWWAFFVRGT 341 Olsenella sp. SK9K4
EGX67057  296 DNSAIAEWAIGKLVIperm----------------edgcNHKLFPGHLVERGS 332 Collinsella tanakaei YIT 12063
OZG59236  298 DFVAAGSGAVRLLLSmmkda---------------dkrgSRLEVVPELVMHGS 335 Bifidobacterium sp. MRM 5.9
OUO21347  285 NLEERGRAVFEHAVGvlaq----------------stepATVRIPGTLVTRAS 321 Collinsella sp. An307
SHI28794  299 DFARVGQEAVALALGtr--------------------reERVEVPVELVERES 331 Actinomyces denticolens
KFI93710  321 RYAEAGRSLVELLIDring-----------------ggpKHVMVGDDLIVRGT 356 Bifidobacterium scardovii
OJX96140  283 DFRALGARYVDALSVelge-----------------evgPHEESWTELVVRGS 318 Micrococcales bacterium 73-15
AJC70053  283 DFETIGRTLTDLVIAriaap---------------tapiEQRVIPSELIVRAS 320 Trueperella pyogenes TP8
NP_696340 293 RFDDIGATAFSMVRRqcege--------------kipvgVKTVIPPELIERGS 331 Bifidobacterium longum NCC2705

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