1MSZ,1UG8,1WHR


Conserved Protein Domain Family
R3H

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cd02325: R3H 
Click on image for an interactive view with Cn3D
R3H domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. R3H domains are found in proteins together with ATPase domains, SF1 helicase domains, SF2 DEAH helicase domains, Cys-rich repeats, ring-type zinc fingers, and KH domains. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Statistics
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PSSM-Id: 100064
View PSSM: cd02325
Aligned: 301 rows
Threshold Bit Score: 29.5046
Threshold Setting Gi: 50550543
Created: 13-Dec-2003
Updated: 17-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
 
RxxxH motif
Conserved site includes 2 residues -Click on image for an interactive view with Cn3D
Feature 1:RxxxH motif
Evidence:
  • Comment:The RxxxH motif gives R3H domain its name.
  • Citation:PMID 9787637

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                             #   #                                  
1MSZ_A         18 VDHFRAMIVEFMASk-------kMQLEFPPslNSHDRLRVHQIAEEHg------LRHDSSgeg---krRFITVSK 76   human
XP_392167     166 IEEICSRIDEFVTSe-------tEELLIEKc-NAFIRRLVYQEVKLRwp---nkLKVESKmnn--fgcILVVQRL 227  honey bee
XP_001607788  166 IDEICSGIEDYVNSed-----dgKELRIERc-NAFIRRLVHQEARLRwp---nkIRLETRnen--gnqFIIVSKI 229  jewel wasp
XP_967921     173 VDDFMKRLSDFLESd-------dDELELPKc-NAFVRRLIYQTTGQKft---nkIVLHTKqnk--nkdRILVASK 234  red flour beetle
EDS26303      143 MAEIEERIGVFLASe-------eKDFTITNc-NGFQRKLVYQMIEAKfr---kqISTSSVele--nkhKGILVER 204  southern house mos...
XP_001454910  166 IRELIDKLEKFNKSd-------eKQITIETt-NGYQRKVIYTYLEAYqk---nmIGESLLkgem-kitKLTNAEK 228  Paramecium tetraur...
XP_001324087  572 MDKVDEKLLEFAESv-------eQDLECIGi-TAIEDKLQEGVPETIewlrragIHVWVLtgd--kleTAIEIGK 636  Trichomonas vagina...
XP_785661     228 IDDVSKRVGAFAAGt-------aDELKLEPc-TGYPSGLHLDTHTTEdkk-grfIVVRRVtee--ekkKLAQDKL 291  purple urchin
XP_001219882  251 ATPDALAPNAFYSQn-------pDDKLLEAm-QSPKDRIFLLRLEQQvi---efVQDSKIppslssiaTVSTPAS 314  Chaetomium globosu...
CAO80438      139 RERQAETFLKPYLPqilqvkitgKPITLEPm-PAAERRIIHRYVEQEk-----gLRTLTIgeg---ekKRIVVFS 204  Candidatus Cloacam...

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