Conserved Protein Domain Family
R3H_G-patch

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cd02646: R3H_G-patch 
R3H domain of a group of fungal and plant proteins with unknown function, who also contain a G-patch domain. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the R3H domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Statistics
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PSSM-Id: 100075
View PSSM: cd02646
Aligned: 24 rows
Threshold Bit Score: 67.9807
Threshold Setting Gi: 50555742
Created: 28-Mar-2005
Updated: 17-Jan-2013
Structure
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Aligned Rows:
 
RxxxH motif
Feature 1:RxxxH motif
Evidence:
  • Comment:The RxxxH motif gives R3H domain its name. Several members within this sub-family have degenerate forms of the R3H motiff.
  • Citation:PMID 9787637

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60
                 ....*....|....*....|....*....|....*....|....*....|....*....|.
Feature 1                                      #   #                          
gi 46136687  482 MDQVGDEMRTFMISg--dEQLILPPmDNHARKIIHELANKFkIKSKSIgkg-dqRRPTLYR 539
gi 49643064  564 IQNIKDEFDAFYRNd--rQSITFPPlDPHGNKIIGKFAYNYfMKASNIgkg-ksTKVYVEK 621
gi 1730825   597 IQNIKDEFESFLSRn--nDRLTFPPlDPHGNKTVMKIAKHYnMKSSKIgka-nhTSVVVEK 654
gi 44980674  517 IENIIDELEAFLVSp--rAALEFPPlDPHGRRTLKNLACAFaLICKQVgqs-thTRVLVQK 574
gi 49652334  632 IKDICYEFETFLHDts-rDSMNFPPlDPHGNKTVIKISNFYnMKSLKCgtg-lkLFVKVSK 690
gi 146420058 631 IKDIKDEFESFLHNpa-rDDLSFPPlDPHGNKTLTKMAKCYnCKSATQgkg-irRYIRVSK 689
gi 149246612 622 IKEIRAEFEALLKDes-rHSMSFPTlDSHGHHTIKNMADCYhMTTDKCgkqgvrHYLKVSK 681
gi 68485603  326 IKDIKSEFDQLLKDes-rQSMSFPTlDTHGHKTIKNLADCYhMSVIKSgkqgirKYLKIVK 385
gi 50555742  639 VEEARKEIEIFINApnkpMVLDFPPmGAEFRSVLKKLSACYhLKPDIHgvq-ksKHVSMLR 698
gi 125602868 335 LDQINTKLRKMVVDq--vDMVCFQPmHTRDCSQVQRLASIYhLKSGCQgsg-kkRFVTVTL 392

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