1KQG,1H0H,1Y4Z,1TI6,2VPW


Conserved Protein Domain Family
DMSOR_beta-like

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cd04410: DMSOR_beta-like 
Click on image for an interactive view with Cn3D
Beta subunit of the DMSO Reductase (DMSOR) family
This family consists of the small beta iron-sulfur (FeS) subunit of the DMSO Reductase (DMSOR) family. Members of this family also contain a large, periplasmic molybdenum-containing alpha subunit and may have a small gamma subunit as well. Examples of heterodimeric members with alpha and beta subunits include arsenite oxidase, and tungsten-containing formate dehydrogenase (FDH-T) while heterotrimeric members containing alpha, beta, and gamma subunits include formate dehydrogenase-N (FDH-N), and nitrate reductase (NarGHI). The beta subunit contains four Fe4/S4 and/or Fe3/S4 clusters which transfer the electrons from the alpha subunit to a hydrophobic integral membrane protein, presumably a cytochrome containing two b-type heme groups. The reducing equivalents are then transferred to menaquinone, which finally reduces the electron-accepting enzyme system.
Statistics
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PSSM-Id: 319870
Aligned: 74 rows
Threshold Bit Score: 60.8658
Created: 18-Aug-2016
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Fe-S cluster
Conserved site includes 40 residues -Click on image for an interactive view with Cn3D
Feature 1:Fe-S cluster binding site [ion binding site]
Evidence:
  • Structure:1KQG_B; Escherichia coli Formate Dehydrogenase N binds to 4[Fe-S] clusters, at 4A distance.
    View structure with Cn3D
  • Structure:1H0H_B; 1H0H_b; Desulfovibrio gigas Formate Dehydrogenase binds to 3[Fe-S] clusters, at 4A distance.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1     #      ####   ##   #   #                        # #                         #  #
1KQG_B     32 KLIDVSTCIGCk--ACQVACSEWNdirdevghcvgvydnpadlsakSWTVMRFSeteqng---------klewlIRKDGC 100 Escherichia coli
KNY28417    6 KTDGMNKCIGCf--TCMLVCSGVNqqn----------------hsiSKSAIKIRtsgg------------lqgkFVVDVC 55  Bacteroides cellul...
KPK38158   18 LFIDLDICSTGeckECVIKCSYLYh--------------------pDNNGIISVae----------------laTYCLVC 61  Omnitrophica WOR_2...
CUS76937   57 VDDFTSKCISCg--ICADVCRQLGynaitf----------tslkdgLSSALPVVk------------------dMRDNPC 106 bacterium JGI-14
EIM63523   14 WEGMLSKCIRCg--YCYEHCPMFKytr----------------wesDAPRAKNIlahglltge---veltpeiaEKSFSC 72  Desulfobacter post...
AIS53155    4 ISFEKERCMTCh--NCELGCATVHs--------------------sGKNLISAIeenvmprih--iifnekknvVAAEQC 59  Thermoanaerobacter...
AAG29808   43 VIFNKNLCVACh--SCEVSCSIIHs--------------------sEKSLISAIlegirprlqivyttgdktggITIEQC 100 Carboxydothermus h...
EYE87868    4 INIKSEYCVNCq--QCENVCSNLWfke----------------inkEKSCIRILnen---------------dgIKITVC 50  Fervidicella metal...
KPK97790    4 LFVDLEICSQCk--ECKVCCDYFYh---------------------PQNNGVANlre---------------yaTFATIC 45  Omnitrophica WOR_2...
ABI69132    6 LYHNTSLCDGCg--LCQLVCALEHcgq----------------wnhYQSRIKIIndme-------------reaFYAVCC 54  Syntrophomonas wol...
Feature 1     ###     #   ##      ##                  #              ####   ### ##            
1KQG_B    101 MHCed-pgCLKACPs---aGAIIQYa-----------nGIVDFQSEnc-----igCGYCIAGCPFNIPRLNke------- 153 Escherichia coli
KNY28417   56 IACkderaCAEACPs----GALEKRp-----------gGGVVLKKDkc-----igCKKCVDACIVSAVHFDdd------- 108 Bacteroides cellul...
KPK38158   62 RKCee-phCINACPv----DALEQQkd----------kGKLLIRHNmrc----isCKSCSHACPYGTIYPEnv------- 115 Omnitrophica WOR_2...
CUS76937  107 TLCm---eCTKVCPt----GALIEIpkdk------vrmGIALIDFSiclgwngdvCLSCSKACPLGARVFEfynsewgnq 173 bacterium JGI-14
EIM63523   73 FFCk---rCEAACSsgvkiTDIMLDlrrdlvelgyngpGTTSITARsc-----arCLQCVRACPHDAREFVdgeg----i 140 Desulfobacter post...
AIS53155   60 KHCkk-akCIEACPe----GALYQDk-----------rGMVLLDWDkc-----tgCGACEEACPFHAIRVTa-------- 110 Thermoanaerobacter...
AAG29808  101 KHCkr-akCIEAYPq----GALFYDe-----------eGRVVCSEEkc-----tgCGLCEKACPFHAIRVId-------- 151 Carboxydothermus h...
EYE87868   51 SQCg---eCIDICPv----QAIYRDa-----------nGVVRINKKdc-----vgCFMCVGFCPEGAMFMHpd------- 100 Fervidicella metal...
KPK97790   46 RHCee-apCVNSCYh----NALEKAa-----------dGHIKRYKMrc-----tsCKSCTVACPFGVIFQDfi------- 97  Omnitrophica WOR_2...
ABI69132   55 TQCee-apCILTCLm----NTIYKQp------------GSDITVRDlyh---cigCRACELACPFDAAVFDvi------- 107 Syntrophomonas wol...
Feature 1        # #####           #   #      #   
1KQG_B    154 dnRVYKCTLCvdrvsvgqepACVKTCpt--gAIHFG 187 Escherichia coli
KNY28417  109 ehKPIICKHCg---------VCAKFCph--eCLRME 133 Bacteroides cellulosolvens ATCC 35603
KPK38158  116 plLIHNCDFCldrrdeenepLCIKTCpy--gALRLV 149 Omnitrophica WOR_2 bacterium SM23_29
CUS76937  174 pyINENCVGCg---------YCVKFCpvggsAIKVV 200 bacterium JGI-14
EIM63523  141 vvDPVKCQSCg---------ICVEICpi--eAITIP 165 Desulfobacter postgatei 2ac9
AIS53155  111 --KCIKCDLCkdvs---dvpACVMYCpt--gALTYK 139 Thermoanaerobacter kivui
AAG29808  152 --RCVKCDLCkdvs---dfpVCVTSCpv--gALTVK 180 Carboxydothermus hydrogenoformans
EYE87868  101 yiEPFKCVACg---------QCVKVCpt--gTIEII 125 Fervidicella metallireducens AeB
KPK97790   98 pyLDSHCDYCvgls--kelpRCVSSCpe--kAIEVK 129 Omnitrophica WOR_2 bacterium SM23_72
ABI69132  108 keKVVNCDLCgg------rpLCVEYCpk--qALTYD 135 Syntrophomonas wolfei subsp. wolfei str. Goettingen G311

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