1CS6


Conserved Protein Domain Family
IgI_1_Contactin

?
cd04967: IgI_1_Contactin 
Click on image for an interactive view with Cn3D
First immunoglobulin (Ig) domain of contactin; member of the I-set of (Ig) superfamily domains
The members here are composed of the first immunoglobulin (Ig) domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. This group belongs to the I-set of IgSF domains.
Statistics
?
PSSM-Id: 409356
Aligned: 3 rows
Threshold Bit Score: 190.532
Created: 27-Sep-2007
Updated: 25-Oct-2021
Structure
?
Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 6 residues -Click on image for an interactive view with Cn3D
Feature 1:interdomain interface [polypeptide binding site]
Evidence:
  • Structure:1CS6; Gallus gallus axonin-1 Ig1/Ig4 interdomain interface, contacts based on 3.5 A distance.
    View structure with Cn3D
  • Comment:Chicken axonin-1 domains Ig1 and Ig4 interact with each other, helping to form the U shaped structure of the intermolecular binding fragment.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1      ##                                                                              
1CS6_A       4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELkmgpdsRYRLVAGDLVISNPVKAKDAGSYQCVATN 83   chicken
O94779      98 GPVFVQEPDDIIFPTDSDEKKVALNCEVRGNPVPSYRWLRNGTEIdlesdyRYSLIDGTFIISNPSEAKDSGHYQCLATN 177  human
Q12860      40 GPIFEEQPINTIYPEESLEGKVSLNCRARASPFPVYKWRMNNGDVdlt-sdRYSMVGGNLVINNPDKQKDAGIYYCLASN 118  human
Feature 1        ####          
1CS6_A      84 ARGTVVSREASLRFGF 99   chicken
O94779     178 TVGSILSREATLQFAY 193  human
Q12860     119 NYGMVRSTEATLSFGY 134  human

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap