Conserved Protein Domain Family
R3H_unknown_2

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cd06006: R3H_unknown_2 
R3H domain of a group of fungal proteins with unknown function. The name of the R3H domain comes from the characteristic spacing of the most conserved arginine and histidine residues. The function of the domain is predicted to bind ssDNA or ssRNA in a sequence-specific manner.
Statistics
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PSSM-Id: 100076
View PSSM: cd06006
Aligned: 13 rows
Threshold Bit Score: 95.5152
Threshold Setting Gi: 49654083
Created: 27-Feb-2008
Updated: 17-Jan-2013
Structure
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Aligned Rows:
 
RxxxH motif
Feature 1:RxxxH motif
Evidence:
  • Comment:The RxxxH motif gives R3H domain its name.
  • Citation:PMID 9787637

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                          10        20        30        40        50        60        70
                  ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
Feature 1                                                   #   #                         
gi 50294474   745 CTDIENTLNKLIDDnn-------------rTSLHFKPmRPPQRYFIRELAKAYnLYSESQDPePNRSVFVKK 803
gi 156846530  748 CNQIEELINKFVNDkn-------------kPSLHFKPmPAPQRNFIHALVEAYeMYSESQDRePKRSVYLKK 806
gi 49654083   739 CARIESTLRDFIVGyqnnnseiegalafdkRLRQFPPmTTPQRAFIEDLASSYkLYTEQQDSgSNQSIFVVI 810
gi 44982421   688 CTQIEQYLIKLMDDss-------------pKALHFKPmRAAQRRFVHELSSSFgLYSESQDPePKRSVYVKK 746
gi 160705935   96 AATQEKQLRLFAADpe-------------aKRFRFKPmQRHQRAFVHSLAEDFgFDTESMDPePHRHVAIFK 154
gi 50308645   707 CDQICAVFDKFIEDtq-------------kLSLHLKPmRVPQRQFIKELASAYaLYSESQDRePNRSVYLKK 765
gi 49648520   737 CIEMEQKIAALVNDes-------------kKVLRFPPmHTAQRAFLHQLAEVYgFTSISQDPePYRSVSIMQ 795
gi 1730713    736 CSQIEAILNKLMDDkt-------------rSSLHFKPmRPPQRHFIRELAKAYgLYSESQDRePMRSVFIKK 794
gi 149246179  760 CSKVEDTIRSFINDynaqien---gvespkRSFHFTAmTSPQRQFVHELGKLFgLYTESQDAePKRATFIVI 828
gi 83765129   599 LQSYESTLHSLAANpt-------------qRSVRFQPaKSSLRAFVHSLATDWgFASESFDPePHRHVFVLK 657
gi 3766365    838 ADEVESLLRNFVNNk--------------aSSFRFPSmRREQRAFVHMFAKLLgLESVSFDPePKRNVMVYN 895
gi 119181279  122 LQGYEASLHALATQds-------------qKSNRFPPcRSQLRAFIHSLAGDWgFQSESFDPePVRHVFVYK 180
gi 154280655  846 LQTYETTFYTLATSqt-------------kRSARFPPaRSQLRAFIHSLAADWgFISESYDPePHRHVAVFK 904

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