Conserved Protein Domain Family
DUF820

?
cd06260: DUF820 
Click on image for an interactive view with Cn3D
Domain of unknown function (DUF820). This family consists of hypothetical proteins that are greatly expanded in cyanobacteria. The proteins are found sporadically in other bacteria. They have been predicted to belong to the PD-(D/E)xK superfamily of nucleases.
Statistics
?
PSSM-Id: 99749
View PSSM: cd06260
Aligned: 369 rows
Threshold Bit Score: 41.6461
Threshold Setting Gi: 168700715
Created: 8-Jan-2008
Updated: 17-Jan-2013
Structure
?
Program:
Drawing:
Aligned Rows:
 
putative active
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:putative active site [active site]
Evidence:

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Feature 1                            #                                               #           
1WDJ_A        26 YQWERSpe-grLWVSPtggeSGRRSLQLAYQLARwneer--glgvVFDSSTGFKFpd-----gsILSPDAAFVergawea 97
gi 159900575  18 QHAELVqg-vvQPVSPvqlqHSLIVTKLLVSLSLwnqtq--tqpgLVGTELGFILgp-----ntLRAADVFFInsnqlgq 89
gi 81710204   18 TALELIdg-qaVPKVSpkflHATIQDALLQLIRArcr-----grgRVRAEWGVILkrgg--vdwVPVPDLTYIsyerlps 89
gi 81708646   21 TAFELVdg-qaVAKVSpqffHASLQRVLLQLLDGwam-----dhgRLGPEWAVVLrrrg--vdwVPVPDLTYVsyerlgr 92
gi 81343272   18 GSYEVIng-evVELVPtgfeHGEYELDLGAFLREklkn----kgyVAVGEVGVLIske---plrIRSADVVYIskkrtpe 89
gi 81672331   23 VNYELQdgtaiAKMSPkr-iHSSLQRTLLFLLSDwgnsqdcplpgEAYPEWGICLqkdg--qdwAPVPDVTYIsdqkltp 99
gi 163781783  18 EGYEVIeg-klKELAPaggeHGYFEQKVSRKIDErfes----sgyVLVGEVGIVIsrd---pltVRAADIVYIskdklks 89
gi 81769636   19 CKAEIVne-klVLMSPtgflPGRAGGEIYASLRDyerlt--ksgyALPDNVGFLInlp---hrrSLSPDAAFYrgqptgg 92
gi 163784757  45 LSGELPl---eAVMGNsg-lHSWLVMIISFFIRNilkdk-gknyeVLSQEVGYKFap-----rsWYNLDIAIWdkekvkp 114
gi 168705255  14 GKAELIng-riVTFMPsgflPSRVARKIVRALEDyatsg--ghgePVADPTGYAFdpplpsgrqSLCPDASFYtgalptn 90
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Feature 1                          #                   #   #                                     
1WDJ_A        98 lseaeregfpplaPKAVFEVRSasqd------peelRAKMGIYlrnGVLLGVLVDpy-aRAVEVFRpg--kPPLRLegve 168
gi 159900575  90 qq--sgdrywqgaPSLAVEVISpner------aidvEEKINDYlaaNLQLMWIIYpr-lGSVHQIEpt--qPRRILgl-- 156
gi 81710204   90 ew--rrneacpvaPEFVVEVVSpgqs------letfATKARDYlaaGILHVWVADpq-pETIAIYSad-gtARVYSt--- 156
gi 81708646   93 ew--dedapcpvpADLVVEIISpdqt------skefEEKAGDYlqaGVGSVWVVDpr-aETVTLFSpn--qKTVYQn--- 158
gi 81343272   90 r----pkgildvpPEIVIEIVSpnnt------yseiEEKVFDYlsaGVDRVLIVDpk-vRKATLFEkgkreAKIYDf--- 155
gi 81672331  100 fa--lendfcpvaPELVVEIISpdqs------feamTQKALDYlaaGVERVWIIGdr-hRSLTIFApd-rpPLTYQg--- 166
gi 163781783  90 v----pkgmlevpPDLVVEIISpsnt------feevEEKVADYlnfGVGRVLLIDpn-aKKVTLINe----DRKIEi--- 151
gi 81769636   93 -------kflngaPVFAVEVRSendygd--kaeeemAKKRRDYfaaGTLVVWDVDvlkeEVIRVYRad-npEQTQVyh-- 160
gi 163784757 115 yl--kenklipvaPEVVIEIDTkadlrkfenpqdyfHRKTQDLldsGVKKVIWIFtk-dKKIWIAEnk--kPWLIVd--- 186
gi 168705255  91 p-----mgfiegfPVFAVEVRSesdygp--kadreyADKRADYfsaGTRVVWDVDpv-aQTVTSYSat-apTTSTTfr-- 159
                        170       180
                 ....*....|....*....|
Feature 1                            
1WDJ_A       169 rVSLDPe------lPGFALS 182
gi 159900575 157 nDCLEHar----ilPQFVVP 172
gi 81710204  157 dVAIPGppg--lhlSAKQVF 174
gi 81708646  159 aTPLAEpmtpglslSALQIF 178
gi 81343272  156 -DEEFEl------lEGLKLR 168
gi 81672331  167 -DQLVEddll-pqlSFTVNE 184
gi 163781783 152 kNFDEEve----ilPELKVR 167
gi 81769636  161 rGEVAEaep---alPGWFMP 177
gi 163784757 187 fDYDVPvmd---siKFNLKK 203
gi 168705255 160 rGSTADaep---avPGWRLS 176

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap