3G85


Conserved Protein Domain Family
PBP1_hexuronate_repressor-like

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cd06272: PBP1_hexuronate_repressor-like 
Click on image for an interactive view with Cn3D
ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and close homologs, all members of the LacI-GalR family of bacterial transcription regulators
Ligand-binding domain of DNA transcription repressor for the hexuronate utilization operon from Bacillus species and its close homologs from other bacteria, all of which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Statistics
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PSSM-Id: 380496
Aligned: 8 rows
Threshold Bit Score: 301.985
Created: 2-Oct-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
putative ligandputative dimer
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the LacI family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                     ##  #                                            #                 
3G85_A        13 TIALYWssdisvnIISRFLRGLQSKLakqnYNYNVVIcpyktdcLHLEKGISKENSFDAAIIAni-sNYDLEYLNkaslT 91  Clostridium ace...
BAC15366      62 TVGLIWpav-drvAVTTLASQINEAVkkagYFMVVSId-----dPITAAGKFLELRFDGVIVFde-gEETRLPAKis-nN 133 Oceanobacillus ...
ADL43123      73 LIGILWpatylsdLLVRFFNGLQNCIlnkkMNIETVFkpyypsnLAQLKELFVENLFNGVIVVgt-tDSDIEFLEnlntV 151 Caldicellulosir...
SFM03346      66 TIALYWasdfrtnYLARLISGFQSEIsnyqYPINIVIcpyrsgsLFLEKGLQSDHTFNAAIIAnt-sISDMEYLNnnlpK 144 Pelosinus propi...
KRE49542      61 AIGVVWpsi-eraALSTLITKINEQLekqgYVTLLSMs-----nIDSAIEIFRRYQVDAILVFgd-rDSDSSSMYlnplQ 133 Paenibacillus s...
YP_001087273  60 KIAFYWqdegfelASTNILQAINHIIslehLNINIIIrpykvghLCDDEYFFANNYYDGIVLTgi-nADDIEYLVknkpK 138 Clostridium dif...
BAD62844      62 TIGLVWpti-ervALSALVTRVNQHItnsgRTMILSIn-----hALEAVELFSRMRIDGILLFeeeiPQDKLPNNi---G 132 Bacillus clausi...
SIS42208      62 TIGVVWptv-ervALTTLAAKINAALeqqkYHMLLSIn-----pTKTAVDLFNRFQVDGVLVFg--eEAHEEIISs---S 130 Kroppenstedtia ...
Feature 1              #           #                                     #                       
3G85_A        92 LPIILFNrlsn-kysSVNVDNyKXGEKASLLFAk-kRYKSAAAILTesl-ndaXDNRNKGFIETchkngi-kisenHIIA 167 Clostridium ace...
BAC15366     134 IPVVAYGveqkldypIINVNHdKSMQLAVDTLId-kGNREIDYIGDletkdirQIIKKETFIRYceekk---inyrLIDS 209 Oceanobacillus ...
ADL43123     152 MPIVMFNrqss-kysCIYVDEySLGEKVAKLFAa-rGHKSVGLIGPsyl-nrnFSMRRVGFLDTctklnlsisdnhIITD 228 Caldicellulosir...
SFM03346     145 IPTVLYNryse-qynTVTIDNfEVGRKAAMLLInkgIKDNIGLVHFkap-ylaMTLRSQGFIDTcikhsi-qfsdeNVIN 221 Pelosinus propi...
KRE49542     134 IPILTYGaagyspysAVDVNRgQAVRLAVGHLAe-lGHKEIAYIGNpqspdplQTVKIEAFREElrllelpfdndsILQM 212 Paenibacillus s...
YP_001087273 139 IPVVVVNreip-gfsSVSIDNeETGRIAALHAIq-nGKNDIAVVFNpts-ftcMTLRGKSFLKTckehgi-hlsdsIYYC 214 Clostridium dif...
BAD62844     133 IPLLSYGvpaieqfpTVGVQHeLAMELAVKEFVe-iGHQSIAYAGVingtgrrQQAKQIGYEEAmrkrg---lksqRIDT 208 Bacillus clausi...
SIS42208     131 IPLLYYGepgpatypTIDVNRrKAIQLGVRHLVq-lGHSRIAYIGDlnpqhsnQREKATGYTLGmeeagy-shlheAVDS 208 Kroppenstedtia ...
Feature 1          #                                                     #                  #    
3G85_A       168 AENsiHGGVDAAKKLXKlkntpkALFCNSDSIALGVISVLNKRqisipddIEIVAIGXNdreytefstPPVTIVDIPIEE 247 Clostridium ace...
BAC15366     210 EGLseEVTSNSLRKFLMkntlkkGIICGSYDITMGLLHHMDKQae----kPMIVSYDNIkkfd--aidTPVHTVGVPSEK 283 Oceanobacillus ...
ADL43123     229 DEVdtEAGRNCMKKMLSngdlptAIFILSSTMAYGVYSVLKENgysipddVEIVGCSDLltce--llnPKLTVIDYSIER 306 Caldicellulosir...
SFM03346     222 TEGsiQGGVLAAEIFLKrkhlpkAIFCDSDSLAQGLLHVFNKKnikipedSQIIAVGLGspeasqystPPLTVVEIPLEK 301 Pelosinus propi...
KRE49542     213 NGLefHDGYMAARAMLDkpirptAVISGGIDLTRGILRAVGERgltvphdISIVSYDNLpqma--dleIPMTVVGVAVAN 290 Paenibacillus s...
YP_001087273 215 SNKidSGYDIAQKMLAKnsl-kkVIFCNHDVVALGMMNAFHESgivigedIQIFAASNGpsrlmarsiPPLTVIDLKMEE 293 Clostridium dif...
BAD62844     209 RGLdaCDADSAIERLLTeptlptAIICSSYDIAIGTLRALRRNgiqvpndLSLISYDNIpqla--eadVPLTAVGVPIDK 286 Bacillus clausi...
SIS42208     209 RGLswQAGYQAVKQLLSkkk-ptALISASYDLTVGIIRGIKELhltipqdISLVSYDHIpeme--kldVPVTAVGTPVQT 285 Kroppenstedtia ...
Feature 1                                          
3G85_A       248 XAGTCISLVEklinrdienptSILFDGPLILRNS 281 Clostridium acetobutylicum ATCC 824
BAC15366     284 IAESLVQMLMkhieaegvvedQVMQLYPEVTFPE 317 Oceanobacillus iheyensis HTE831
ADL43123     307 MVYKSLNLITemitg-issepISLIEDSYFIFRE 339 Caldicellulosiruptor obsidiansis OB47
SFM03346     302 MAAECLRLIInvleh-rtdtsFHVNYESKLIIRD 334 Pelosinus propionicus DSM 13327
KRE49542     291 ITTVIATTILeliea--pdslKTVYLEPELVVRA 322 Paenibacillus sp. Soil522
YP_001087273 294 TAERSLRMIIdtvtg-ringiQQQVIYPSIIYRQ 326 Clostridium difficile 630
BAD62844     287 LAKELVETLLalieg--eqaaTGRKLTPELVRRN 318 Bacillus clausii KSM-K16
SIS42208     286 IATEITNHLLqlas---gkkvPPAILDVELFQRQ 316 Kroppenstedtia eburnea

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