2IKS,3O74,3O75


Conserved Protein Domain Family
PBP1_FruR

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cd06274: PBP1_FruR 
Click on image for an interactive view with Cn3D
ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs
Ligand binding domain of DNA transcription repressor specific for fructose (FruR) and its close homologs, all of which are members of the LacI-GalR family of bacterial transcription regulators. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to members of the type 1 periplasmic binding protein superfamily. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor
Statistics
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PSSM-Id: 380498
Aligned: 32 rows
Threshold Bit Score: 275.239
Created: 12-Jan-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand bindingdimer interface
Conserved site includes 15 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:3O75; Pseudomonas putida fructose transport system repressor FruR binds fructose 1-phosphate, contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1               # ##                        #                                         
2IKS_A     22 SIGLVIPDLeNTSYTRIANYLERQARQRGYQLLIACSeDQPDNEXRCIEHLLQRQVDAIIVStslppehpfyqrwandPF 101 Escherichia coli K-12
3O75_A      4 TLGFILPDLeNPSYARIAKQLEQGARARGYQLLIASSdDQPDSERQLQQLFRARRCDALFVAsclppeddsyrelqdkGL 83  Pseudomonas putida...
OHC57901   69 LVGLIIPVHdNRFFSSMSQSFEAQARDRGLVPVIASSlRDPAEEMRIVETLASYAVEYLFVAgatdpdsi-safcnaaGL 147 Rhodobacterales ba...
SHJ17280   67 IIGMIIPKYdNRYFGAIAERFEATARNHGLFPVITCAqRDPELEAAAARELVSYQVETIIATgatdpdgi-tdicraaGV 145 Maribius salinus
NP_355922  71 LVGLLVPVYdNRFFSSMAQTFEGQARKRGLSPMVVSGrRDPEEERRTVETLIAYSIDALFIAgvtdpdgv-hqvcaraAL 149 Agrobacterium tume...
SNY92228   69 LVALLMPDY-TSFFSTLAEAFSARVRQLGLCPVIVSTeRNPEEEISTVQQLASYAIDSLFIAgaaapeti-skfcqkaHI 146 Cohaesibacter sp. ...
SAL77442   72 LAGMILPHYrNRFFAGLAETFEEQARSRGLCPIVVSTqRDPSVEMSVTETLLSQRVEVLFIAgvrdpspl-nalclaaGV 150 Burkholderia sp. L...
SJZ73931   72 LAGMIIPHYrNRFFAGLAEAFELKARERGLCPIVVSTqRDAPTERKVTQTLIAQQVEFLIIAgvqdcdel-delcaaaGI 150 Aurantimonas sp. U...
CCN73103   70 MVGLLIPQHdSRFFASLAQEFDHSAKSRGLCPIVIATeRESSDELKTAETLISFSVDALFIAgasnpdai-selcrqaAV 148 Vibrio nigripulchr...
AOY00218   69 TLGLVVPQLtNFTHASLAEALEPLAREAGYQLMIVSSsDDPVQEAAGIGQLIARQVDGLIVVpcnadpa--vyagwarRL 146 Jeongeupia sp. USM3
Feature 1          ##                                                      #                  
2IKS_A    102 PIVALDRaldrehfTSVVGADqDDAEXLAEELRk-------fPAETVLYLGAlpelsvSFLREQGFRTAwkdd--prevH 172 Escherichia coli K-12
3O75_A     84 PVIAIDRrldpahfCSVISDDrDASRQLAASLLs-------sAPRSIALIGArpelsvSQARAGGFDEAlqgy--tgevR 154 Pseudomonas putida...
OHC57901  148 RHIFVDLpgn--ggPSVISDNhRGATDLAEKLLaekpdlpqeARNKIYFLGGnrsshaTSRRIEAFRAAltrhgtppspE 225 Rhodobacterales ba...
SHJ17280  146 RSLNLDLpgs--aaPSIVSDNrGGARDLTLKLLdach--gtaPGQPLLFVGGratdhnTAARIAGFRDGhadrgievpeS 221 Maribius salinus
NP_355922 150 PHVNIDLpgk--faSSVISNNrHGAEILTAAILahaakggslGPDDVILFGGhdd-haSRERIDGFHAAkadyfgveggD 226 Agrobacterium tume...
SNY92228  147 DHVFIDQpca--laPSVVTDNeAGSLALTQEILrsmpkgpasDRHRPYFIGGdatlpaTASRIHSFRAEvtrqlgqctdD 224 Cohaesibacter sp. ...
SAL77442  151 PCINVDLpga--daPSVVSDNrGGACALTEALIdkmi-argaSPGELVFLGGvvdeyaTDMRIAGFRDAfaarglrpaaE 227 Burkholderia sp. L...
SJZ73931  151 ACVNLDLpgt--laPSVVTDNrGGARELTRHLVaaar-erggDPAKIHFVGGrsgefaTEERVIGFTEAlaeagispdpS 227 Aurantimonas sp. U...
CCN73103  149 PHINLDLpgs--kaPSIVTDNfSGATDLVSALRgri---gnaCPHTMVFIGGnsedyaTSERIRGFNHAtsdl--pdnqC 221 Vibrio nigripulchr...
AOY00218  147 PLVFADRrvpgssvPFVVTAAaAATEALVGGAIa-------dGAREILYIGGgaslstSADRLAGYRAAvdragiavgdD 219 Jeongeupia sp. USM3
Feature 1           #                         ###                         ##                # 
2IKS_A    173 FLYANSYerEAAAQLFEKWLEth-pxPQALFTTSFALLQGVXDVTLRRdgklpsdLAIATFGDNeLLDFLQCPVLAVAQR 251 Escherichia coli K-12
3O75_A    155 RYQGEAFsrECGQRLMQQLIDdlgglPDALVTTSYVLLQGVFDTLQARpvd-srqLQLGTFGDNqLLDFLPLPVNAMAQQ 233 Pseudomonas putida...
OHC57901  226 QIITCGYapRSAMREIAALMDrlgglPAGLFVNSLTAFEGVLGHFVNLppeafaqSVIGCYDYDpFAAYLQFPVHMVRQN 305 Rhodobacterales ba...
SHJ17280  222 NILACGYagAKAYAALDAWTGd---lPRGIFVNSTISLEGVIRWLGDRgalgadrTLFGCFDWDpFGALIPGNVGMARQD 298 Maribius salinus
NP_355922 227 DIEITGYspHMTEMAFERFFGrrgrlPRCFFVNSSINFEGLLRFMGRHdgeafgdIVVGCFDYDpFASFLPFPVYMIKPD 306 Agrobacterium tume...
SNY92228  225 QIIACSYdsDRAEQEIKELYAhlgglPAGLFINSSATFEGVLRFLAIIpeadlrnCSIGFFDFEpFGMLLRFPVHMVRQR 304 Cohaesibacter sp. ...
SAL77442  228 AVECFGYdaSSARQAVARRYEtlgrlPDGLLMNSITAFEGLVQFASRLsredwhsAVVGCFDWDpFAAHLPFEVTMMRQD 307 Burkholderia sp. L...
SJZ73931  228 KILCCGYlpKAAHEAFSGLAAag-klPDGLFVNSITAFEGFAAFFQESpea--gqPVVACFDWDpFAATLPLPVIMMRQN 304 Aurantimonas sp. U...
CCN73103  222 AIYAEGYlpKQVQETASRIFQpskpaPAGVFVNSITAFEGIIQFMQENhrhplrrSVIGCFDYHpFLAYVPYNAFMVRQN 301 Vibrio nigripulchr...
AOY00218  220 WISERDYlrTSGQARLADWVNrhgryPQAVFTGGITLLEGVLAFVNAHggt--gpDFLLTFDDHpLLDCLPQAVQSVAQD 297 Jeongeupia sp. USM3
Feature 1                                   #   
2IKS_A    252 HRDVAERVLEIVLasldeprkpkPGLTRIKRNLY 285 Escherichia coli K-12
3O75_A    234 HGQIAATALELALaaiee-kryePGVHAVGRTFK 266 Pseudomonas putida KT2440
OHC57901  306 SNHMIEQAYALIDrgi-----ndARVIEVEPELI 334 Rhodobacterales bacterium RIFCSPHIGHO2_02_FULL_62_130
SHJ17280  299 VNAMMDEVFRVLGsdq-----peEKVTLIPCNIT 327 Maribius salinus
NP_355922 307 IAQMLEKGFELLEenr-----tePEVTIIEPQLI 335 Agrobacterium tumefaciens str. C58
SNY92228  305 HRELIKQAFKLLEska-----epGTLVTVTPVIY 333 Cohaesibacter sp. ES.047
SAL77442  308 VERIISEAFALADaheas-assgHPLVIVPTGFG 340 Burkholderia sp. LMG 22936
SJZ73931  305 VEEMIRHCFDILDgkp----agpNGRIVVEPTLA 334 Aurantimonas sp. USBA 369
CCN73103  302 VEEMIHLAFECWErgd-----tgNHVVKVKPELV 330 Vibrio nigripulchritudo SFn118
AOY00218  298 SHTLAADSLAAVLalla--gqpaEPERWIDASVR 329 Jeongeupia sp. USM3

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