Conserved Protein Domain Family
PBP1_LacI-like

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cd06278: PBP1_LacI-like 
ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors
This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Statistics
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PSSM-Id: 380501
Aligned: 127 rows
Threshold Bit Score: 225.876
Created: 26-Dec-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative ligandputative dimer
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the LacI family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 ##  #                                           #                   
CCH76303   81 RIAMVMdl-gNPLSPSLLTPVHDALaasGYQTLLFAehrg--rmdALEGLFDRSVDGAILStvtldsrlpyelerhHTPF 157 Tetrasphaera japon...
OII38082   60 AIGIVTseiqNPFLPYLLDELTRVAreiGVNVVVWNdsdp-emplATAGVAAGTVDGVLFTaakaatpgidrlvelGVPV 138 Curtobacterium sp....
ERK64573   26 IIGIVVpsnyNIFHYHILQILTNVFqmyDLRTMVFTsaptdnindLLQNLYQYQVDGVIVTsavlgqnvtgswtrkGMPV 105 Oscillibacter sp. ...
SNY91026   65 IVAFVTgglhNPFYSRVLEEFIIRLqdiGCQVMAFHvngddtldaVAPKLSGYRVDAIVSAlsvltdaaleqfttlGVPL 144 Cohaesibacter sp. ...
SHM44037   65 IVAIVVgggyNPFHAATLEAFSHALqqaGKRIMLVQaqsdrmldeMVGDLIGYRVDGVVTAlsilspkaadaitahRIPV 144 Sphingobium sp. YR657
KJV31318   76 IIAVVVggfyNPFFTEFLRCVTGLLrerRLEIMLVDtasddnlndIVGELSRYRIDGVISAmaihsakvarklesaGIPI 155 Luteibacter yeojue...
SMH35831   67 LVAVIVgglwNAYHSAVLERFATRLrdaGKQVLLVPvdsdyaldaVLAQLSSYRVDAIVSGlavlsqevadalsafRIPI 146 Azospirillum lipof...
PDQ21736   89 LVAIVVgglyNPFYSTVLEEFMIRFqaaGHQVLLLHipndhalddVIPKLASYRVDAIVSAlailspagaatlaklKIPV 168 Mesorhizobium sp. ...
AMB44824   72 IVAVAVgalsNPFHAMTLESFTAGLqrtGRQVMLVQvedewalgsAVELLAGYQVDAILSSlpvtepevvqalsrfGVPV 151 Methylobacterium s...
BAD83946   61 TIGVVVselsNPFFQEIFETLSQEFakaGSRVIVWDsalh--erdAIRALQERSVDGVIMSawdedaqemrdiletGLPV 138 Corynebacterium gl...
Feature 1        #            #                                    #                        # 
CCH76303  158 VYLNrlsdlverdSVSADDaGGSAQVARMLLdvGHRDFGLLLGpem-tstSRDREAGFTAVLAQHHlavppeWIARTDFT 236 Tetrasphaera japon...
OII38082  139 MLCNradvssradVVMTDHhGTGRRAAEFLLagGRRAVGAVFGpdn-tfaSPAREAGFRGAMQAAGvp--lvFAAHGVTS 215 Curtobacterium sp....
ERK64573  106 ILFNsdlpdaevsMVQSNHfHSGEQMAEYLTamGYQRFAYVTAeksphlnLRSRQEGFLSGLIAHGid--kcQIIPAAYS 183 Oscillibacter sp. ...
SNY91026  145 ISFNthlqkkglySISSDNfLAGQLAARHLLeqGGKRVAFLGGpan-npaNIDRCRGFTEESRKHGki---pVILNDEFS 220 Cohaesibacter sp. ...
SHM44037  145 VTLNsgitstsihVVGIDNeGAGRAAANHMLarGARRFSYVGAds---vaSRAREKGYRQAIASAGls--ppLCLSGTLD 219 Sphingobium sp. YR657
KJV31318  156 VAVNskrv-gnmrTVSTDNrAAGGVAADVLVdgGCKRIAYLAGrds--qaQSERERGFLKRLEERGrr--kpERVLAGFS 230 Luteibacter yeojue...
SMH35831  147 VSFNagvtservaSVESDNrASAATAAALLHrrGGRRFAFLAGpee-spaSRDRLAGFRDGLAALGle--epRVIAGDYS 223 Azospirillum lipof...
PDQ21736  169 IAFNtavnnewvtSVSSENfEAGRQIADLFIarGARSFGFISGpst-spaSARRREGYEERLRERGag--ppTVARGDYR 245 Mesorhizobium sp. ...
AMB44824  152 VTLNspattdwvrTVVTDDaWAGAEMARLLHerGARRFGYVAGrsg-tmgQERREAGFREGLRELGid--syARAQGDHK 228 Methylobacterium s...
BAD83946  139 VLLNrtapkgsfdSVTSDNhNGGQLVADYLHqhGKHHLVFIQGnph-tstSMERLNGFRAGLHALNqp--spTVLNGEFS 215 Corynebacterium gl...
Feature 1                                                             #                #      
CCH76303  237 EASGRAAFDEVMSapq---rptALFCANDWMAVGALNRARELgirv-pedLTIVGFDDLpvagwatINLTTVANPvEDSS 312 Tetrasphaera japon...
OII38082  216 YETGYRAARELLEqgv----pdAVFCSSDVIAYGALDALRAAgvsv-pgdTWVVGIDGLpmsswhaFDLTTFTQDiPVVA 290 Curtobacterium sp....
ERK64573  184 YKSGWEAGTFLLSqkd---vpdAIFCSGDINGFGVIDAIRQQtslrlgfdIGVSGYDAPiigdfqgYSMTALAQPtTQLA 260 Oscillibacter sp. ...
SNY91026  221 FAGGVRQALQLLEmpa---lpdAIFCADDLIAIGLIDTFWRTpvknapdvLRIIGCDDIpqsawapYDLTTIQQDeNVMI 297 Cohaesibacter sp. ...
SHM44037  220 HGGGMTAGRIMLQasd---rsdAIFCVNDLTAIGVMDVWRLEaglsfpgdAQIIGFDDIpasawpgYALTTINQNvDQMA 296 Sphingobium sp. YR657
KJV31318  231 YEEGHAAAVELLSags---rpdGMFCVNDLVALGAMDAIRQAfglsvpgdIQVVGFDDIpmagwraYELTTFHQDmEALA 307 Luteibacter yeojue...
SMH35831  224 YAGGQSAARRLFArssagepadALFCANDLIAFGAMDVIRRElglrvpedVMLVGYDNIpsaawsaYDLTSFDQDaEALV 303 Azospirillum lipof...
PDQ21736  246 YEGGFAAALSMFSgps---rpdALFCANDLLAIGAIDALRERlvlrvpddVLVAGFDDIpaaswasVGLTTFTPDaAAMV 322 Mesorhizobium sp. ...
AMB44824  229 HGGGYEAVRALYAsgt---gpdGLFCFNDLTAMGAIDGLRHEfglrcpedVLVAGYDNIaaaawpsYRLTTVDIGlAAVT 305 Methylobacterium s...
BAD83946  216 FEKSFAVTRDFLDqhg---apdAFFCANDYMAFGVLNAVKAAgmsv-pedVWVIGYDNVsqsdwpiLDLTTVRQGsRQMA 291 Corynebacterium gl...
Feature 1                                      
CCH76303  313 VAAAKAllhrlevgpdeayVHVVSPTRLVLRAT 345 Tetrasphaera japonica T1-X7
OII38082  291 RTSVERllaria-gdgsepTHTLVPADLVERGT 322 Curtobacterium sp. MMLR14_010
ERK64573  261 RDAVEMllqlia-epetpkKKIIRPMKLIIRTS 292 Oscillibacter sp. KLE 1728
SNY91026  298 DRAISIlesmyadtleeeeGQYIVKCNMVLRSS 330 Cohaesibacter sp. ES.047
SHM44037  297 TCAIDLienpr----egpaDPHLVDFRVIVRST 325 Sphingobium sp. YR657
KJV31318  308 RGSVELlvde------panPRITVPCRLVPRGT 334 Luteibacter yeojuensis
SMH35831  304 TEALALveemta-rpsahgPVRVVPARFVERGS 335 Azospirillum lipoferum
PDQ21736  323 DETISIvlsaan-gkplatKPVVVSAKLIERGT 354 Mesorhizobium sp. BSA136
AMB44824  306 ESALALiasq-----ageaTEALVRPHLVERTS 333 Methylobacterium sp. AMS5
BAD83946  292 QLGAQKllnrie-npttpaVKTILPVQLEIRGS 323 Corynebacterium glutamicum

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