Conserved Protein Domain Family
PBP1_LacI-like

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cd06281: PBP1_LacI-like 
ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors
This group includes the ligand-binding domain of uncharacterized DNA-binding regulatory proteins that are members of the LacI-GalR family of bacterial transcription repressors. The LacI-GalR family repressors are composed of two functional domains: an N-terminal HTH (helix-turn-helix) domain, which is responsible for the DNA-binding specificity, and a C-terminal ligand-binding domain, which is homologous to the sugar-binding domain of ABC-type transport systems that contain the type 1 periplasmic binding protein-like fold. As also observed in the periplasmic binding proteins, the C-terminal domain of the bacterial transcription repressor undergoes a conformational change upon ligand binding which in turn changes the DNA binding affinity of the repressor.
Statistics
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PSSM-Id: 380504
Aligned: 22 rows
Threshold Bit Score: 296.842
Created: 26-Dec-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative ligandputative dimer
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to other members of the LacI family.

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 ##  #                                            #                  
SNX75560   63 KNIAFFADIsNPIFAQIAKESQIELeqfGYTLSLCNigekd-iankISSFLEGRRFDGIILSipkeddeelneslsniDI 141 Bacillus sp. JC228
SHH65972   76 MIGFIFSDIrNPLYSAMVKGAEDALtehGYMLVVASsnssperevaLVELFTRRRADGLLFTveeesdagmlqairdaRF 155 Alcaligenaceae bac...
KJB96512   83 TIACAIRDIsIPEFASFVWSAERIIrdaGYTLILTNtgddprheadLLKVFAKRRIDGLLLTksaeavpeledaiarvNA 162 Skermanella aerola...
OCW56345   78 MIGFIFSDIrNPLYATMTKGAEGVFgprGYLLVSSSsdgrmerevnLIDLFRRRRADGLILTiadedcpevrsaiarsGI 157 Hoeflea sp. JC234
OJX76322   64 TVGFVIDDIaNPWHASCFKAVDAEMrqrGYSLYLMStqgraseeaaAIDMLQHGRADGMIMTinneqdprtikrlkelRI 143 Mesorhizobium sp. ...
NP_773018 124 EIGIIVRDItTPVLASFVRAAQDLFeeaGYGLLICSsdnrkdreleLLRRFRQRRIEGLITTtssevdadlaqarndlDF 203 Bradyrhizobium jap...
KIF42969   72 AIGFMVNDIsNPLFATITRHAEAVLhdnGYALVLANsgdrpaaeveLLQQFFRPRTDAAMLSlsdetnpqllarlrdvEL 151 Lyngbya confervoid...
ADB49458   58 SVGFAVSDIaNPVLAEIITGAEKRLraaGYSLLLTNsegnaeldieHISLLERRRVDGVILSlvdehhpdvvaalrqlAC 137 Conexibacter woese...
SMF36871   80 MVACILTDIgNPLYARLIAAVQRKLndsDYSMVAMStgnvesrelaALATARRYRFDGIVYItgsqdraevnaaiaevGI 159 Tistlia consotensi...
SDB74651   66 SFACVFRDLtVPVLAAFVDAMQQELgseEYAIFVASsyhdlaheraLLANFAARRVDGLVIAsssesdqrllrlisraPM 145 Belnapia sp. CPCC ...
Feature 1          #             #                                   #                       #
SNX75560  142 PIVTINrdlp--nltaKVLTDYySSVKEAIIYLLslGHTNIALVGGnkeirpTREGIRAYKDAYLIHNRvpnqALIKNGK 219 Bacillus sp. JC228
SHH65972  156 PVVLIErela--lpidTVGADHfNGTRQAAEYLLslGHRRIALISGgktnrvGRDRLGGFLQAHQRAGVpvdrDLLRLDS 233 Alcaligenaceae bac...
KJB96512  163 PVVLIDreag--nladSVVIDHrRGIRAAVDHLAsfGHTRIALLTGkphmrpSRERIEGYREGLAANGIpfdeRMLQTES 240 Skermanella aerola...
OCW56345  158 SFVMLEralg--deatSISADHyGGTRQAVEHLKqmGHRRIAMITGgrgtlvMRERLRALEDAMAAGKLdpdpDLLRLDS 235 Hoeflea sp. JC234
OJX76322  144 PSVLLDrdip--leidAVLTEHaTGLRQATSYLLelGHRRIAIITAgsdirpGRERVRGFVEAFQRAGLpvpeDLIRSQS 221 Mesorhizobium sp. ...
NP_773018 204 PVLMFDrevd--gthdIVQVDHaSGVNQAVTYLLslGHRRILLLTGpvniypARARVEGYKRAFAAQKLdldpTLVRTVG 281 Bradyrhizobium jap...
KIF42969  152 PLVLMDrepqg-ldidRVMTDHaEGMRLATAYLMslGHRRIALITAdrrispGRARIDGFTAAHEAAGIsvdpDLVRSRN 230 Lyngbya confervoid...
ADB49458  138 PIVLVDrdipdgvttrGASFDHaLGMRAATEHLLelGHRRFALITGgpe-rpARERRQAVEETLANVPDae-hTAYPGGF 215 Conexibacter woese...
SMF36871  160 PTVQIErekp---dndTFCVDHrQGVRLAAEHLRaaGHSRIGVVTPgigarpAAARVDGFLALCAELGVtdgaDLVRQVQ 236 Tistlia consotensi...
SDB74651  146 PVVLLDraap--agldVVRADHaSGTQQAIDNLLrlGHRRIAMVSGepsvgaTRERLRGFSNAHTAFGLqpdpDLLRFGS 223 Belnapia sp. CPCC ...
Feature 1                                                             #                #      
SNX75560  220 fssESGETIFMDLLPdiqkgyITAILSlNNQMFYGILRGMRKAklqyPKDISIITFEDSelmqlldPPLTVIHRPiKDIG 299 Bacillus sp. JC228
SHH65972  234 fasEYGFRETQVLLGre--rrPTAIISsGMHLLSGVLEAVRMKgldiPGDISLITSNDTelarlatPAVSVIRYDpYALG 311 Alcaligenaceae bac...
KJB96512  241 fvaEQCFRTTSFMLDgt--drPTAIIAgGMSLLVGVLKAVSLRglriPDDLSIVAGCDSdlalltsPPTTAIRWDiQAWG 318 Skermanella aerola...
OCW56345  236 fdaEYGYQQVQMLMGkk--epPTAILClGVRLLPGVVSGLQNMgktfPGDVSLICSNDTetasiltPPITAIRYDaHMLG 313 Hoeflea sp. JC234
OJX76322  222 lsvDFGFREATALLQmp--qrPTAIIAaGNRILVGVLRAIQQQgvsvPGDISLIGCDRSdvallypGPITLIDRPvEEIG 299 Mesorhizobium sp. ...
NP_773018 282 fdaATGFRETAVALEra--nrPSAIIAgGIDMLPGVLKAIRAThlhvPSDISVIGGADSdlalladPAISVLRWDfTQIG 359 Bradyrhizobium jap...
KIF42969  231 lsaSYAFQETFSLLSsp--spPTAIISgGNQILLGVMRAVRQLgvsvPGALSIISCDSTdlaelgsPPITVIWRDlAQIG 308 Lyngbya confervoid...
ADB49458  216 s-vDHGRRAVLEILAqd--srPTAIIAgGNMLMEGALMSLREAgvrlGGDLSFVGCDDLavaelhdPPIAVVRRDsFAVG 292 Conexibacter woese...
SMF36871  237 gpvDSGFNAAMALMRla--spPTAVISlGSQLLAEVLQYMAAAglavPEDLSIVSIGDNeltrfgnPPISAIDWDfARVG 314 Tistlia consotensi...
SDB74651  224 faiQFGFDQAEALLAap--rpPTAFFVaGAALLPGVLRALRARglriPEDVSVVAGADSelaefhqPPISVVRWNhGALG 301 Belnapia sp. CPCC ...
Feature 1                                            
SNX75560  300 KSIVKIliksiee----peqieeiESVVIPTEFIIRDSC 334 Bacillus sp. JC228
SHH65972  312 REAALQllrriar-----etpqdpIRIEIPTEFVLRQSC 345 Alcaligenaceae bacterium BZ59
KJB96512  319 KASAELlldrigg-----rhsgpgRQMMLPTELVIRGSC 352 Skermanella aerolata KACC 11604
OCW56345  314 RMAAAVlleqidq----kggkpevKKFEIPTELVLRESV 348 Hoeflea sp. JC234
OJX76322  300 RTAAQLllerlgg-----qadrpaQRIAFPTHLILGGSC 333 Mesorhizobium sp. 65-26
NP_773018 360 ATCARMllerie------apgtepRRLAFAPELVVRDSC 392 Bradyrhizobium japonicum USDA 110
KIF42969  309 RAAADLlvqrlas-----eeewrpRRIMLPTELLVRDSC 342 Lyngbya confervoides BDU141951
ADB49458  293 DAAAELlladlep----gsnadapREIVLPTEFVARPSC 327 Conexibacter woesei DSM 14684
SMF36871  315 SDAAGRllqridarrgggpddgptIARLYETRLIERRSV 353 Tistlia consotensis USBA 355
SDB74651  302 TAAARFllrrlq------tpglppQEHVTPTEFLPRGSF 334 Belnapia sp. CPCC 100156

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