3O1H,4YHS


Conserved Protein Domain Family
PBP1_TorT-like

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cd06306: PBP1_TorT-like 
Click on image for an interactive view with Cn3D
TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria
TorT-like proteins, a periplasmic binding protein family that activates induction of the Tor respiratory system upon trimethylamine N-oxide (TMAO) electron-acceptor binding in bacteria. The Tor respiratory system is consists of three proteins (TorC, TorA, and TorD) and is induced in the presence of TMAO. The TMAO control is tightly regulated by three proteins: TorS, TorT, and TorR. Thus, the disruption of any of these proteins can abolish the Tor respiratory induction. TorT shares homology with the sugar-binding domain of the type 1 periplasmic binding proteins. The members of TorT-like family bind TMAO or related compounds and are predicted to be involved in signal transduction and/or substrate transport.
Statistics
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PSSM-Id: 380529
Aligned: 42 rows
Threshold Bit Score: 238.25
Created: 26-Oct-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand binding
Conserved site includes 5 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Comment:TorT associates as a co-receptor with the histidine kinase receptor TorS to form the sensor complex.
  • Structure:3O1H; Vibrio parahaemolyticus periplasmic-binding protein TorT binds trimethylamine N-oxide (TMAO), contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                 ##                         #                                        
3O1H_B      7 KICAIYPhlkdsYWLSVNYGMVSEAekqGVNLRVLEAGGYpn-kSRQEQQLALCTQwGANAIILGtvdphayeHNLKSWV 85  Vibrio parahaemoly...
SDU72833   86 QLCSVLPhmkdsTWIGINYGEVSQAkslGVGLSTSDAGGYnn-lSEQVSQVENCVSsGADAILLSavsfeslnNAVKDAV 164 Gordonia westfalica
CPR13982   57 KLCVLLPhlkdsYWVGVDYGVVEEAkrlGASAIIYEAGGYdn-lPRQIAQYDDCLAsNPDAIIVGpisesglaEKMKQSM 135 Brenneria goodwinii
SLN65134   59 SLCAVVPhmkdgYWISVDYGLVAEAkrlGVELTILQAGGYdq-lSRQVSQFDDCVAsGADAVLIApiseaglaDKIAATA 137 Roseovarius haloto...
OBR46278   44 KLCAMIPhlkdsYWVAVDYGLTQEAkrlGASINIYEAGGYdn-lPKQISQFDDCLAsNPDAILVApisesglgPKMMQAM 122 Burkholderia tropica
KRV76326   53 RMCLLMPhtqdsVIMAYIYAAVDEArrlGQALTVFDAGGYgn-dSNQRAQFENCLTlGVDAILLEpinpggwdSDIAKAQ 131 Pseudomonas citron...
SDI92779   78 QIGASLVylsdpLWVGFQYGIEQQLeklGLPKPYVTAAGGyhkhMEQIAQVEDLLSrGIDGLLLGpanpdalvTAVEVAE 157 Paenibacillus naph...
AJE98982   27 TIGYATPdlsssFWVSMTYGVEDEAkklGVKLVKLNAGGDan-vSTQISQIQDLSEsKVDAMVVGatngeavrGAVEHAI 105 Pandoraea apista
AJY75188   36 VIGLSVPslsssFWTSIVYGAQSEAdrlGAKLIVVNAGGDtk-vQDQISQIQNLIQkQVDALIVGatdgkgvaPIVSQAV 114 Paenibacillus sp. ...
OLB98246   37 RIGVLEPnmaipHFVAQAYGFVDEAeklGARVILYDAGEHkn-vAKQVSQMEDLIAnKVDAICIVpgttatavAQIDEAI 115 Candidatus Rokubac...
Feature 1              ##                                                                     
3O1H_B     86 G-NTPVFATVNqldldeeqstllkgEVGVDWYWMGYEAGKYLAerhpkgsgkTNIALLLGprtrggTKPVTTGFYEAikn 164 Vibrio parahaemoly...
SDU72833  165 AaGVPVIDVGNgvssn-----evagHVLQDYVDMGRLIGEHLVsld----rpMRVALLPGpagagwAERSREGFEATiag 235 Gordonia westfalica
CPR13982  136 AkGIPTVSFINpvlkt-----ditsKIFVDFELKGAETGKYLGekma--gkaGMAGAFPGpqgsgwAESYLKGFEEGvkn 208 Brenneria goodwinii
SLN65134  138 EtDVVQIGFVNpiqsa-----pvdsKIFVDYATKGLQTGKFLVehlg--eegGGAVALPGpqgsgwAESYMSGFEEGvad 210 Roseovarius haloto...
OBR46278  123 KkGIPVISFVNpvvdt-----pitsKIFVNFSDKGYMTGQYLKtllg--pkgGLVGVFPGpqgsgwAEGFLEGFNKAian 195 Burkholderia tropica
KRV76326  132 AqGTKVINVTEglda------kvdgRVLVDFRVNGRILGEALKarhpqgsatVKVVVLPGgagipfVEDTVAGLREGlqg 205 Pseudomonas citron...
SDI92779  158 RaKVPVVNFAVgintd-----kivtDIQATQEMLGAMTAEYLGkem---ngkGKVYMLSGvagsswALGREKGFIEYmqk 229 Paenibacillus naph...
AJE98982  106 GaGIPVVGLSSlpast-----klasTVGANHYEMGRLQAQCLGdam---agkGEVAMISQqqgqswADQRRQGFLDTlka 177 Pandoraea apista
AJY75188  115 SkGIPVVGLSSlpesd-----elvsEVGADHYKIGQLLAKGMGdal---kgtGQVAMMAGpagqhwATDRAKGFQETiss 186 Paenibacillus sp. ...
OLB98246  116 AkGVVVVNVNImsdnp-----kaigRIRSDDYELGRLQGEFIVkal---kgqGNVVMIAGvsgnsaFIMRAKGFKEYvak 187 Candidatus Rokubac...
Feature 1                                                                                     
3O1H_B    165 --sdIHIVDSFWADNDkELQRNLVQRVIDmg--niDYIVGsaVAIEAAISELRSAdkt-hdIGLVSVYLSHGVYRGll-r 238 Vibrio parahaemoly...
SDU72833  236 --sqVTVADVKYGDTGkEVQLKLVEDVLAsnp-diDALVGnaVMAEAATQVLGERgla-drIGVYTTYVTPELVELmg-a 310 Gordonia westfalica
CPR13982  209 --sgLNVAPAKFGEASvTGQLPLVEDTLQsyp-dmNALWGtaTAAEVSVGAFEEAgi--enPVIVASHENIAVIRLvk-e 282 Brenneria goodwinii
SLN65134  211 --ssVEILERKFGPAGvAESLGLVEDALQthp-dlKAIWGg-APAAEAAVGAVEEagy-ddVTIVASYENQTMVDSlk-n 284 Roseovarius haloto...
OBR46278  196 --snVKSTNPKFGDAGlSIQTRLVEDTIQsnp-glTAIWGtaTAAEGAVGAIAEAgm--pkTIIVGHSEDQAVLKYla-q 269 Burkholderia tropica
KRV76326  206 --ssVEVVDVVYGGMDaAAQLKLVEDVLVahp-dlSYIVGngIAVAQAVNVLAQRdms-dqVKLMTTYLDADLLTQir-k 280 Pseudomonas citron...
SDI92779  230 nhpdIEIVGKHYGKNDrAEGLNAAQDALQanpdidAFYAGadLIAAGVADAIKAVgkt-gqIKVVTMSGIGKDTQMlikn 308 Paenibacillus naph...
AJE98982  178 rypnIKVVAESRNAVTrNDAINLVDNWLQrfpdlgGIYNAvdDSAAGALIAVKGAqrr-gqVKISASNLSQTAQQMik-s 255 Pandoraea apista
AJY75188  187 efpaIKIVSIEHTDDNrNGALTLMEDWLQrfpdltGVFTAtdDIGAGAADAIAAAnkt-ggILIASSNLSPVGIDYmk-r 264 Paenibacillus sp. ...
OLB98246  188 -hpgIKVLSEQWTPNAtDKGLKLMEDWSQafpkidAVYSGgdRLTIGAVQALLAQgkqpgdVIVTTVDYNDDTERLvr-e 265 Candidatus Rokubac...
Feature 1                                                 
3O1H_B    239 nKVLFAPTDKMVQQGRLSVMQAAHYLrhq--pyEKQASPIIKPL 280 Vibrio parahaemolyticus
SDU72833  311 gRANCGPSEQSSLIGQMAVDYAVRVLedl--paPGAVERYAPVP 352 Gordonia westfalica
CPR13982  283 gKISAVATEFPVMQAKVAVDAAIMALekkpvekYYSVVPKIMTQ 326 Brenneria goodwinii
SLN65134  285 gSVSAFATEFPVMQGRIAVSLAVAVLqge--evPQHLGVIPQMV 326 Roseovarius halotolerans
OBR46278  270 kKIAAAGIEYPVMQARVAVDLAVKALqkq--pvLAHYAVIPFVL 311 Burkholderia tropica
KRV76326  281 gRILAGAAESSVMLKRIAVDLALRAVegk--gvAKDLVPHVQLV 322 Pseudomonas citronellolis
SDI92779  309 gEITMSLPYQAVEQGRMLVNIMVRYLnge-rnlPKRIGVPVETI 351 Paenibacillus naphthalenovorans
AJE98982  256 gDLVCTSAQQIVTQGREALRQAVAAAshk--pvQRDVQAPSVLI 297 Pandoraea apista
AJY75188  265 gLITFETAEKVVVQGKAAAEQAYNAVagk--pvEKQVITDVLYV 306 Paenibacillus sp. 7188T
OLB98246  266 gWISAAMVQVPVTMGRWGIRVALLALekk--piPPNLLTPTYVV 307 Candidatus Rokubacteria bacterium 13_1_40CM_68_15

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