Conserved Protein Domain Family
PBP1_sugar_binding

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cd06307: PBP1_sugar_binding 
periplasmic sugar-binding domain of uncharacterized transport systems
Periplasmic sugar-binding domain of uncharacterized transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein (PBP1) superfamily. The members of this group are predicted to be involved in the transport of sugar-containing molecules across cellular and organellar membranes.
Statistics
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PSSM-Id: 380530
Aligned: 122 rows
Threshold Bit Score: 132.3
Created: 6-Feb-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative ligand
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to the periplasmic transport protein receptor for D-glucose and D-galactose

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                  #                                                                  
SLN61623   67 RLEFFLprs-tqtFFGEVKVAIETFAatl-plVSSVSVHEldnldPRTLEAAVNELSv---ETLGVGIVAVDhpltrQII 141 Roseisalinus antar...
AAO75594   67 TFICLLpqhlegeYWTAVELGIHEAIatysdfNTSVKINYydpydYHSFVDASEAILt--qQPDGVMVAPTApqytkGFT 144 Bacteroides thetai...
AAO76541   52 HFVAITpsfthgeYWEAISDGIDKAAsemesyNITITKLFfdqynNKTFDDIVRNLLd--eKVDGVLIATLFtdsviRLS 129 Bacteroides thetai...
ABR42156   64 HFIALIpsfhegeYWAKLSQGIEKAKrelfsyNIDVEQIYfdqydSNSFDELIPKIEt--aDCQGVIIATLFkqsvlTLT 141 Parabacteroides di...
SFI50526   63 VFGIVMppk-diqFFEFIRSGIGAAAeelkdlGVRLDYRYvdnerPDEGAAAIRELVe--aGASGILFSVMDdelirASI 139 Paenibacillus sp. ...
AAO75931   52 SFVCLIpyyiehdYWHSVVGGIERARqelrpfNVSVDYLCyhqgnKESYLEVCRRVEe--sNVDAVLIAPNFrnetlALT 129 Bacteroides thetai...
EDK24975   69 KIGVILtpd-ynpFIHDIISGINRAKkefsafGIEVIIKLmtsldPSEEIRIINDLTe--nGVSGMAVFPLDhpnvyALL 145 Ruminococcus torqu...
SEN12873   62 VVGVVIsse-gnpFFDDVIRGIKLAAekyeiyGLKVIWKNmr-gyDVKSQHEIMEELk--dKVNALIINPVNdpviiDEI 137 Megamonas sp. Calf...
ANQ26589   71 NLAVILlsq-nqhFYKLLGESIQNEVydk-fpHCKLKIFYlddlnHLTYTTLLNRISd---AYDTIALVSPEhpqiiEAV 145 Vibrio natriegens
AAL95664   61 VYSFIVesr-nsyYTEQIKLGIKGAKkeykhyNLEIIEIVtninkPMEQVLKLKKLLnsdkQIDGIIIIPLDktkilELI 139 Fusobacterium nucl...
Feature 1                  #                                                         #        
SLN61623  142 RDLDRsNVKVITLAsdllsthraaHVGLNDRVAGRTASLAMGrfv-rrAAGTVALFIGdpa----fhgQRERELGFHLVm 216 Roseisalinus antar...
AAO75594  145 DQLQTlDIPYIYIDsnikdvpplaFFGQNSRQSGYFAARMLMll--arDEKEIVIFRKihegivgsnqQENREIGFRQYm 222 Bacteroides thetai...
AAO76541  130 QELDRnEIPYVYVDsniegqhqlaYFGTESYDAGVIAARLLTdk--isSTSDILMARIihsgkndsnqGKNRREGFCHYl 207 Bacteroides thetai...
ABR42156  142 QRLDQkGIPYILIDsfidhtncisYYGTHSYDSGYIAGRLLFeq--irQGDDLVIFRFtrkgdscstqVQKREEGFRDYl 219 Parabacteroides di...
SFI50526  140 DFAAErGVPVVTFNsdvegskrlcFVGQDLRKSGLVAAGLMNrv--lrEEAKVVIVTGslk----fhaHRSRVEGFRQGl 213 Paenibacillus sp. ...
AAO75931  130 DYLQAkKIAYAFIDfnmeeanaltYIGQDSYKSGYIAAKILMrnyqagEGQELVLFLSnnknspaeiqMQRRLAGFMSFi 209 Bacteroides thetai...
EDK24975  146 NSLIEkGIAVITFNspapevkslcFIGQDHYKGGRTAAGLMCki--lpKDARIGIIISstk----lscHQQRLLGFQNKi 219 Ruminococcus torqu...
SEN12873  138 NEFVDaGIFVVTINndvdnskrqcYVGSDYTNGGETAGALLQmi--ipNGANIGIVMGssk----vlgHKQRLAGFEENi 211 Megamonas sp. Calf...
ANQ26589  146 DKLASnGVNVISLLsqlntteeihHLGINPNVMGRLAAWYIHhm--anDNGAVGIISGskr----fhcQSGYMSGFYSYf 219 Vibrio natriegens
AAL95664  140 NPYLE-RIKFITVSvfls--kkiaYVGTDYQKCGRLAAELLTkt--lnSNDKVLVIDNgdd----nisSKYYLNGFLDRa 210 Fusobacterium nucl...
Feature 1                                                                        #            
SLN61623  217 etdFPGLTILPAIATKSdsALSARITRGLLEehddLVGIYCMGGGRSGIASVIEELPparrPCVIMHDLSepirryLAKG 296 Roseisalinus antar...
AAO75594  223 eehHPSCTILELDLHAErnDEDNEMLDEFFRshpnVKNGITFNSKVYIIGEYLQSRGkk-nFNLIGYDLLernvtcLKEG 301 Bacteroides thetai...
AAO76541  208 ketGFTGNLHEVELKINdsVYNFIKLDEIFEanatIEGGIIFNSTCYILGNYLKARGmq-kVKLVGYDLIerntqlLSDG 286 Bacteroides thetai...
ABR42156  220 antPFKGKIHLLHVHADdkEENKRLLNTFFEkypqVRIGIIFNSRAHFLGDYLSSERpdypFKLLGYDVIepnvryLENG 299 Parabacteroides di...
SFI50526  214 aegGGRLEAVAVIEGFDryADTFERLDRVLArhpdLAGIYMATGDVAACVDAIKRHGregrIRVVCNDLLpaaeqgLRER 293 Paenibacillus sp. ...
AAO75931  210 teeYEELVIHEVVLNKSnqENNQKTLDEFFRlhpkATLGVVFNSRVYQLGEYLRSAGrs-mKGLIGYDLLkanvelLKSG 288 Bacteroides thetai...
EDK24975  220 setRPDIKIVGISENQDkkEDAFRITLEYCNklpdLDGIYITGGGIAGVGSALDIIDdsenIHVICHDLTegsihlLQTQ 299 Ruminococcus torqu...
SEN12873  212 n-kNPKFKIVDIQENDDddISSYDKTKMMLTkhkeINAIFIVAAGVYGACRAVLSLGkqndLTIIAFDTVpttvemMKKN 290 Megamonas sp. Calf...
ANQ26589  220 eehAPDTEVIESTMSLEnySLALESAEELLVchpnLSAIYCAGGGSEGVIEALKNHRtkkeIFTVCHELTdvtrdaLNEG 299 Vibrio natriegens
AAL95664  211 ---NNDKMNIVGPIKKNgvEESLQFLKTILKke-nISSIFINRYAQDILLELSDNILk--rQKNITTGIGnrirklIMER 284 Fusobacterium nucl...
Feature 1            #                                     
SLN61623  297 VIDLIIDQNAKLFGEQSVIRLLgtiaa-tepflPEHYIEPRLIMR 340 Roseisalinus antarcticus
AAO75594  302 SVSFLIAQQPELQGLNGIKALCdhlif-kkdvtCINYMPIDLLTV 345 Bacteroides thetaiotaomicron VPI-5482
AAO76541  287 VITALVAQRPERQGYDGIKSLCnhllf-kqnpeKVNLMPIDILLK 330 Bacteroides thetaiotaomicron VPI-5482
ABR42156  300 LITHLIAQRPEVQGYHCIKALFrhlil-kekiePVNYMPIDILVK 343 Parabacteroides distasonis ATCC 8503
SFI50526  294 IIDFTIVQNPERQGYLSLRILFdrvfagkqpeaEHHFTETHIYIP 338 Paenibacillus sp. UNC496MF
AAO75931  289 DVHYLIGQRPGLQGYCGVKALCdhvvf-kksvePVKYMPIDIMIK 332 Bacteroides thetaiotaomicron VPI-5482
EDK24975  300 VVDFVLGQEPVNQGYLLIKTLFeylvk-nitphKIIDIPVTISTD 343 Ruminococcus torques ATCC 27756
SEN12873  291 VIKAVIYQHPYRQGQRAMQIVFeylvngishdkSRHIMKNEIKIL 335 Megamonas sp. Calf98-2
ANQ26589  300 LVHTVLSTRKEQLIEQLFKVVYqsegn-nqsplSFEPVLIDTYCR 343 Vibrio natriegens
AAL95664  285 KILATVADDVYSTGYKACQLMVdmlykefgksvKKIILEPQILLM 329 Fusobacterium nucleatum subsp. nucleatum ATCC 25586

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