4RU1,3ROT


Conserved Protein Domain Family
PBP1_ABC_sugar_binding-like

?
cd06312: PBP1_ABC_sugar_binding-like 
Click on image for an interactive view with Cn3D
periplasmic sugar-binding domain of uncharacterized ABC-type transport systems
Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Statistics
?
PSSM-Id: 380535
Aligned: 36 rows
Threshold Bit Score: 282.199
Created: 7-Jan-2008
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
ligand binding
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:4RU1; Acidothermus cellulolyticus sugar-binding protein binds Myo-inositol, contacts at 4A
    View structure with Cn3D

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1           #    # ##                                                                 
4RU1_A     22 TIAMITHqqpgDTFWDIIRKGALAAAAk-dNVTLKYSNdp---dsTKEAVLIQDAVNaKVDGIAVTipdppALIPAIKQA 97  Acidothermus cellu...
OYT62810   34 VVYFIPHagmaDPFWATQIKMAKRVAAllpDLELRVTApet-ysiKKQLDYLMAAIAaKPDAIIITisdakAMDKPLRKA 112 Thermofilum sp. ex...
PIE32955   37 KIAVVVHgsktDPFWKPVKRGVKDASElydDLEVTYTDtdv-fsiDTFLGNLDTAIAsRPDALVCTltvpeAMDETLRKV 115 candidate division...
EHP70209   56 TIYMVTHgaptDPFWIPVIEGAEYAAAl-lGIKVIYEApst-fsvSGLTDLIQSAIAaHPNGLIISvpapsAEAPLVEQA 133 Metallosphaera yel...
KUO89920   31 VVYFISHgsptDPFWIPVIEAAVYAGHl-fNMTVIYEApst-fsiSEMVELAQSALAaKPSGLIITvpsgtAFEPIIQEA 108 Thermocladium sp. ...
ANL51047   52 VFYEASHawlgHPFWNVLNKGMKDAAEk-yGVKVVSLQensppnsGQQSEKIDRAIAaNPDGLIVSlpdakGVESSLKRA 130 Rhizobium phaseoli
ARA93993   42 TYFVVTHgsagNPFWAVVVRGAMDAGEa-lGVNVQYLGpdr-fsiAEFVSLIDAAIAaQPQGIAVTitdptAVAEPLQRA 119 Rhodothermaceae ba...
SNB52826   37 TFYIVSHggpaDPFWGVVLKGMNDAAKv-yPVEAKYFGpek-fsiQELVNLLNSAIAaKPDGLAVTitdpkALDEPLRRA 114 Thermoflexus hugen...
CRH05700   37 GYVFISHagvsDPFWKIPFRGARDAAKe-lGVPLTILApeqvndySRQVELLQQAIKqQPLGIATTlsdphGFSTALMEA 115 magneto-ovoid bact...
ACM22416   38 TFYLVSHggpaDPFWAVVMKGLKDAGEk-yGVETVYLGpek-yslKEFIDLVNSAIArKPDGLIVTitnpvALDEPLRKA 115 Thermotoga neapoli...
Feature 1               #                                                       #     ##  #   
4RU1_A     98 VAaGIPVVAFNagidqwk-----esgalmYFGQDETVAGQAAGARATs--------eGFKHVLCVLQaqGQVQLESRCNG 164 Acidothermus cellu...
OYT62810  113 IKeGILVIAINiedyrppd---kripyitYIGMDERISGSVLAEETYnrfhe-mfgrYPKRAVIGIHqpGLICLEMRSDG 188 Thermofilum sp. ex...
PIE32955  116 IDaEIPVVAINapdlrspe--seripvltYVGEDSYFVGVLAAKETLtr-------fTPRRAVFCNHqeGAANIKARGQG 186 candidate division...
EHP70209  134 YQeGIPVLVVNaipvpsavpnwpynetiaYVGQIDYDAGVGLGHYIVtwyeqthggqKPMNIVIFNHepGQFSLTERIAG 213 Metallosphaera yel...
KUO89920  109 YSdGIPVIVVNvvpppgslpgfpynetlgYVGQYDYGAGVGAAQYMIqwyek-tygkPPTNIVIFNHepGLLGLTLRIEG 187 Thermocladium sp. ...
ANL51047  131 TEkGIPIIAMNvgdtrpag---eripylfYIGGDEKLGGERAADYILsh-------kKPTSGLCVNTnaGQSGLVARCEG 200 Rhizobium phaseoli
ARA93993  120 ADaGIPVVAINaadpdg------rlpyllYIGSDEYRAGYAGGQKMLea-------gFSGSAVCASHeiGNLMHETRCRG 186 Rhodothermaceae ba...
SNB52826  115 IQqGIPVVAINvadprpeg---eripymfYIGMDEYLGGVRAAQRMLav-------rTPKRAVCAIHevGHVGLEARCQG 184 Thermoflexus hugen...
CRH05700  116 KRaGIPVIVFNarpqnddr---ivnpylaYIGMDDYKAGQAMARSVLqr------tePEGHVLIAVQqaGHAGLEARFAG 186 magneto-ovoid bact...
ACM22416  116 IKmGIPVVAINvpdtrppe---eaipylvYVGMDEYLAGVYAARRMLqe-------fTPKRAVIAIHepGHAGLEARAKG 185 Thermotoga neapoli...
Feature 1                                                   #                            #    
4RU1_A    165 VQQTfkg-----qyTKLYVNGAdqPSVRTTIAAKLKqdpsidLVITLGapiAQLAIQAVKDAgs----nAKIATFDFNtq 235 Acidothermus cellu...
OYT62810  189 IMRVskkl--nipvEKLDITMDp-TKAMEILRAYLAkhpdteVIFTLGpcgSHPAIKLIKELgak--gkIIHACIDLSpk 263 Thermofilum sp. ex...
PIE32955  187 WADTmteq--giaaESVVVSADa-QQAAEDVATYLKeypdtdALFMSNirtTEAVIKRLVADgvdvgnnLKIAQMDISps 263 candidate division...
EHP70209  214 IDSVlqang-ipnaTVVPTSLNy-AQSESIMASYLQdhpntqVIITLGpagTDPAVAALNQTgla--hkVPLFSFDYDni 289 Metallosphaera yel...
KUO89920  188 VENEfkasginatiNVMPISLNy-AESLSTIESYLEahpntqLMVTLGpagTDPAVAAVKDLnlq--gkVYIMAFDIDnv 264 Thermocladium sp. ...
ANL51047  201 FTTTykkan-vkaeTIVVPPDSp-TQAAEQFRAYLTanpdiaSVFVVDptyTVEIMKVLEEAgks--dqVTLFSYDMSke 276 Rhizobium phaseoli
ARA93993  187 FADAlaeq--gvevVVLDITSDt-VTAIEVFRSHFAahpetgAVMTLGpdgMSSWRAFVDESgr---gdVLHATFDLDpv 260 Rhodothermaceae ba...
SNB52826  185 FLDEmskk--nvpvEKLDIGTDp-TKAVEALKAYFTrnpdtdALLTLGplgTDPAVKFLKEDnlv--gkVLHGTFDLHpg 259 Thermoflexus hugen...
CRH05700  187 IVQQlgtr--gievARLNVGDQggADAEVRFRDYLKanpgltTVISLGpesAHPIGRVIKRGgl----kLFFASFDLSpl 260 magneto-ovoid bact...
ACM22416  186 IMDVlsek--nipvEKLDITTDp-TKALSIMKSYLMkhpdtdAIFTLGplgAHPAIQLVEEEglk--gkVKIGAIDLTtk 260 Thermotoga neapoli...
Feature 1                    #                                    
4RU1_A    236 vPAEIENgQLQWAIDQQpYVEGYEAVDSLWLyitngdtigggEAVKTGPFFV 287 Acidothermus cellulolyticus 11B
OYT62810  264 iLEAIKEgITLVAVSQQpAFQAAQSVYTAYLylkyg--iippKIIPTGPTVV 313 Thermofilum sp. ex4484_15
PIE32955  264 iLESIQDgMIMFTLDQQpYLQGYLGVVFAYLnlkyg-ftpppAPVSTGPAVV 314 candidate division KSB3 bacterium
EHP70209  290 tLTAIRQgVDIATVDQQpMEQGFLSVVVMFMyiklg-iapaeYNISTGPFIV 340 Metallosphaera yellowstonensis MK1
KUO89920  265 tIQGIENgTVIGTVDQQpFAQGFMPVVEMYLylcyg--iappYNVTTGPFIL 314 Thermocladium sp. ECH_B
ANL51047  277 vIDAIEKgKILGTVDQQqYLQGYLAVEFLYLnkehg--ftlaQDILTGPAII 326 Rhizobium phaseoli
ARA93993  261 tLDAIRDgITRFTIDQQqYLQGFQSVVTLYLkhnye--lvqaNDLLTGPFFV 310 Rhodothermaceae bacterium RA
SNB52826  260 tLSAIKEgVTLFAIDQQqYLQGYMAITWLYLykkyg--lrpaNDVLTGPGFV 309 Thermoflexus hugenholtzii JAD2
CRH05700  261 tSRMIKDgIISFTIDQQpYMQGYLSVQMLRLaary---kmipPDINTGIGVV 309 magneto-ovoid bacterium MO-1
ACM22416  261 iIEAIKDgTVLFTIDQQqYLQGYLPVVFLYLykeyg--liphEKVLTGPSIV 310 Thermotoga neapolitana DSM 4359

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap