Conserved Protein Domain Family
PBP1_ABC_sugar_binding-like

?
cd06315: PBP1_ABC_sugar_binding-like 
periplasmic sugar-binding domain of uncharacterized ABC-type transport systems
Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type 1 periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Statistics
?
PSSM-Id: 380538
Aligned: 11 rows
Threshold Bit Score: 400.18
Created: 9-Jan-2008
Updated: 2-Oct-2020
Structure
?
Aligned Rows:
 
putative ligand
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to the periplasmic transport protein receptor for D-glucose and D-galactose

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                  #                                                                  
BAV48416   57 KTIVVLGADmkNGGILGVTKGVEEAAaalGWTVKTLDgagsiGGRTAAFGQALAlNPDGIIINGfdav--eqkPAMEQAK 134 Mesorhizobium loti
CAD18177   58 VTVAVISEDlrNGGILGVTKGIREAAgaiGWGTRLYDaggtpAGRARAVASALAlQPGGVILVGvdar--emqPQLQPFV 135 Ralstonia solanace...
AAK03333   61 KNVIFVASDmkNGGVLGVIDGMKEATavaGWKFDVLDgagsvNNQLSALNQAIArKPDAIVIGGwnpn--vakIPLGKAN 138 Pasteurella multoc...
OHD77987   65 VNVAVVCEDlrNGGVLGVARGLDEAAkvlGWRIKTLDahgtvNGRNKALDSALDmKPDGVILLGsdah--tleHRLSHFK 142 Sulfuricurvum sp. ...
SEH55345   88 ATIAYVGSDltNGGVNTVAEGVKEAAaviGWKVNVYDgkataQGRTDALNQAIAsKPAAIVLGGfdpt--eqaATIKTAN 165 Leifsonia sp. CL154
OZH51734   14 KTVVVVAEDlrNGGIIGVVVGIQEACqalNWDVKNFDisssaTLRHQSLVEALAlKPDGLILVGgdivsistySYLKKFE 93  Hydrocoleum sp. CS...
ADZ91267   57 KKIVFVASDlrNGGVNGVAQGVSEASshiNWELRFIDalgseVRQGAALRRAVAmKPDGIILGGidik--hhrEALKVAK 134 Marinomonas medite...
OWT44946   46 KKILFIASNlrNGGVKSVSESFKQAGhhlKWQVDIADcggqkSCVLSNLKKALKdVPDGIVLGGfdga--dfrDTLKKAR 123 Bdellovibrio sp. S...
SDB54651   55 KKIAYISNDenNDASRAWGVAIQEAGskiGWDVTIIDgkatpVGWINAFNQAIAlGVDGIVTSAdaa---slqEPIGEAV 131 Bauldia litoralis
APR39909  100 LTIVYVSADqsYVSFVNWGRGVTEAAkalGWKAVVLNgqgtvTGTLAAMQQAVAsKPAAIVTSAdas---alqGPIKQAV 176 Paraburkholderia s...
ODT12283   75 LRIAYVSADqsYVSFVNWGRGVEEAAeilGWKVDVLNgrgaiTSTLQAMQQAVAsRPDAIITSAdas---alqGPISQAV 151 Kaistia sp. SCN 65-12
Feature 1              #                                                       #              
BAV48416  135 AaKIPMAAWHAAPTVGpiddlgiiaNVSTDPMEVSKAAADWAFvdakgkPGVIIFTDstYQIAIAKADRMKKEIedl-gg 213 Mesorhizobium loti
CAD18177  136 ErGIPMVGWHVSPFAGpipsspvavNISTDPVAVARVTAMATIarsggrAGIVVFTDshFQIAKAKSAAMVEVIrachgc 215 Ralstonia solanace...
AAK03333  139 KnGITLVAWHATPEPGpidkynifyNVTSDSDQIAKLSAQLAVansdgkAKVVILTDslYEIALRKANVMKDVIeqckec 218 Pasteurella multoc...
OHD77987  143 KeGIPVVGWHIGPIAGklssgsvamNVSTDPLKVAQVTAMKAIveskahAGVVIFTDstFEIAMSKANAMAQIIrecqkc 222 Sulfuricurvum sp. ...
SEH55345  166 DaKIPVVGWHAGASTGpgng--lfaNVSTDPLAVSQLAAAFAVadsngkAGVAIFTDgqYQIAVEKAKAMQAYItacsgc 243 Leifsonia sp. CL154
OZH51734   94 QqQIPIVGWHVAPYPGsvpntpvqvNVTTDSRKVALAAAGLVQpqegqtAGVVVFTDrrINIALEKANQMVKALescdrc 173 Hydrocoleum sp. CS...
ADZ91267  135 KlGISVVGWHSSDSTEgneelglfaNITTDPMEVAEISALLAItegagdMKAAIFTDrrYSIATLKANVMKKTVekcsrc 214 Marinomonas medite...
OWT44946  124 KkSVKVVGWHAAAKSGptsd--mftNITTDPIAVAHTAAAQVLnygaktGGVIILTDrdYSIATTKTLAMKKAIeampnf 201 Bdellovibrio sp. S...
SDB54651  132 AkNIPIVGIHAAALPGpneelhlftNIQQDPREIGKAQADWVIvdsggkGKVVVTSHneFAIAEAKSRATEARIkecpdc 211 Bauldia litoralis
APR39909  177 AqHIPVIGIHATAFPGpdpklglynNISSNPAEIGETQAAYVIaqsngtAKDLHFLDnsFAIARFKAEAATDPIkacsgc 256 Paraburkholderia s...
ODT12283  152 AaGIPVIGIHSAAYPGpdpelklytNITSNPAQIGETQAAYVLaqsdgkAKVLHFLDnsFAIARFKAQAATDPIkncegc 231 Kaistia sp. SCN 65-12
Feature 1                                                                        #            
BAV48416  214 KVLEYVDTpiAETSQRMPQLTTSLLQKYGdaWTHSLAINDLYFDFMGPSLAAAgksgtdapINVAAGDGSesaYQRIRSS 293 Mesorhizobium loti
CAD18177  216 ELLEVRDVaiSRSAELMPAITRELLARYGddWTDTLAINDIYFDYAATELTKAgrpa-asmRMLSAGDGSaaaFTRIRAG 294 Ralstonia solanace...
AAK03333  219 KVLEFIDTplADTSSRMPSLTFSLLQKYGddLQYTLAINDLYFDFMAPSLRSAnkg--empYNISAGDGSvtaYQRIRTN 296 Pasteurella multoc...
OHD77987  223 TLLEIRRVpiSQSAQLMPKITRDLMARYGsrWTHALAINDIYFDYAAPEFTKTgr----diHLFSAGDGSpaaFMRIQAG 298 Sulfuricurvum sp. ...
SEH55345  244 SVLSYQDSpiADADQRMPGIISNLLQKDGdkLTYLLAINGNYFGGAQQALRAAgkdpagtpKSVAAGDGDsaeFQRIRSV 323 Leifsonia sp. CL154
OZH51734  174 TVLSVEDIplDQTASLVPPAIRRLQKRYGnrWTHSLAINDLYFDHAINELVSSdlp---tpLNISAGDGSisaLLRMKHK 250 Hydrocoleum sp. CS...
ADZ91267  215 LLIDYFDIplDQVANHTHKVVQTLISDEQ--VTHLLVINDLYIDFATPVYEQVqskgmsipVNISAGDGSmaaYDRIKTG 292 Marinomonas medite...
OWT44946  202 KLIAVEDVaiAHADKEIPHLIKAWNQRYGksWTHTLAINDLYFDMMAPSLKAIhre---dvVGIAAGDGSvdgIARVDAL 278 Bdellovibrio sp. S...
SDB54651  212 EVVEYVSSpiAEVAQRQPQLVISWIQKYGt-PLYVTAVADYTLDFQVPALRSAgve--agdIKLVGADGQrsaYERIRSG 288 Bauldia litoralis
APR39909  257 KFIDMVNIpiADQTRRIPAVISGIVANQGk-GWWGTTCCDNFYPYIASALRASgvk--pdeVHLVGSDGPpsaYDMIRKG 333 Paraburkholderia s...
ODT12283  232 TFVDMVNIpiADQTQRIPTVISGILANQGk-DWWATTCCDNFFPYVAAALRAAnvd--psqVKLVGSDGPpsaYDLIRKG 308 Kaistia sp. SCN 65-12
Feature 1              #                                 
BAV48416  294 q-FQKVTVAEPlNLQGWQLVDELNRAMagekwSGYISPLHVVT 335 Mesorhizobium loti
CAD18177  295 t-FQVGTVAEPlSQQGWQLVDELNRLLaraplSGYVAPVHLVS 336 Ralstonia solanacearum GMI1000
AAK03333  297 n-HQFATVPEPlNLHGWQLVDELNRAFakekpSGYITPAHLVI 338 Pasteurella multocida subsp. multocida str. Pm70
OHD77987  299 t-FQYGTVAEPlNLQGWQLMDELNRALsaqsvSGYITPVHLVT 340 Sulfuricurvum sp. GWF2_44_89
SEH55345  324 d-YQAATVAEPlTMEGWEIVDEVNRALagqqwSGFVPAPGLIT 365 Leifsonia sp. CL154
OZH51734  251 s-YQYASVAEPlLMHGWQLVDEIHRNLmgappSGYVNQPYVVT 292 Hydrocoleum sp. CS-953
ADZ91267  293 q-FQLATVPEPlYMQGWQVVDELNRSFnssppSRYTAPVHIIT 334 Marinomonas mediterranea MMB-1
OWT44946  279 ksPQLVTVAEPlQTQGWQLADELNRALagepaSDYKTQVLVIS 321 Bdellovibrio sp. SKB1291214
SDB54651  289 e-YQAVTVSEPvEMQAYQAVDEINRAIqgeapSDFVQAPYLVT 330 Bauldia litoralis
APR39909  334 e-YEVATVPEPsTLFGYEAVDSIVRAMageppSKFVQPTYLVT 375 Paraburkholderia sp. SOS3
ODT12283  309 e-YEVATVPEPsTLFGFQAVDAVIRAAagqepSHFVQPTYLVT 350 Kaistia sp. SCN 65-12

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap