Conserved Protein Domain Family
PBP1_ABC_sugar_binding_like_10

?
cd06319: PBP1_ABC_sugar_binding_like_10 
Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems
Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consists of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Statistics
?
PSSM-Id: 107314
View PSSM: cd06319
Aligned: 5 rows
Threshold Bit Score: 416.119
Threshold Setting Gi: 14025556
Created: 25-Jan-2008
Updated: 17-Jan-2013
Structure
?
Aligned Rows:
 
putative ligand
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to the periplasmic transport protein receptor for D-glucose and D-galactose

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Feature 1                    #                                                                   
gi 144900830  36 RIAYVVsdlrIPFWDIMWRGIQSRAaalGYQAKAYSadNNARSEITNLVDVIRsGVSGIILSPtnssaavtllklandaA 115
gi 34497977   36 EIAYITakadLPFWDTVGKGVKAVAeanGYAFSELDskLSAEMQLNNVRQAIDrRVAGIVISPtnsksaeealilarraK 115
gi 37677004   23 QIVYMVsdlrIPFWQIMWGGIENEAkqlGYEAVVLSaeNDAKTELENIIKAIAlKPDGIILSPtnssaavtilkmaeqaN 102
gi 149189328  22 QLVYLVsdlrIPFWEIMSRGVTSKAnvyNYDVLVLSanNDAKQELENLVVAIDmKADAIIMSPtnssaavtllnlakqaQ 101
gi 14025556   27 TVAYIApsldISYWQWVGYGVKEKAkelGMDYVEYTseNSPAKQMDNARTAVTkGVSAIVIGPvsststpplldylakqK 106
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Feature 1              #                                                         #               
gi 144900830 116 IPVVVADIGADGGey--vsYISSDNRDGAYRIGRVLAaklkalgwadGRVGIIAIpqkranGQARTAGFMQAMEEAGlk- 192
gi 34497977  116 IPVAIADIGASGGdy--vsFVKSDNYRGAYDVGTELAkamkaqnwasGAYGMVTIelsrknGQDRTNGFRDAMKDAGfpr 193
gi 37677004  103 IPVVISDIGTEGGtf--vsYIESDNFSGAFQLAQILAaamkakgwqnGEVGVVAIpqkrknGIERTEGFVEAAKQQGmr- 179
gi 149189328 102 IPVVIADIGAESGdy--lsYIKSNNLQGAYDLGKMLAakmersssvdGTVGIIAIpqmrvnGQQRTQGFIAALDESGid- 178
gi 14025556  107 VPIAFAGIGPQPGltnytcSVTANNYETGKAQGKFTCelak--erggNKVGMLSLpqdrenAQKYLKGAKEAFAANGcd- 183
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Feature 1                                                                     #                  
gi 144900830 193 gaGIRQQVDFsyQETFDHTRDLLAtapdirAIWLqgsdrYQGALDAIAAAGrtgqVLLMTFDAEpeflemiprgTLAGAG 272
gi 34497977  194 eiVLRQMKDYsaEETYRYVKEMLAahpglrGFFIetdqpVAGALRAIREAGkekqLLLVSFDAMpdvvrllksgALVAVG 273
gi 37677004  180 iaAIKQQKDFsyQETFIFTQTMLRehrkirAIWLqgsdrYQAALDAIDSLGqrdkVLLICFDAEpefidmirsqQLVGSG 259
gi 149189328 179 vnGLYQQVDFsyQETFDYTIEILTknprtrAIWLqgsnrYQAALDGIAKMGkekeVLLICFDAEpeflellrtdVIAGAA 258
gi 14025556  184 lvQILETRGLtiNEAVTQANDLLTanpdvkAIYGmydeaGTGAAKVAETRGltgkIGITVADGSpttiallkkgAIQGIF 263
                        250       260       270       280
                 ....*....|....*....|....*....|....*....|
Feature 1         #                                      
gi 144900830 273 MQQpFLMGERAVETMArhhngqpveREQKLPVLAVSEDNI 312
gi 34497977  274 MQQpYLMGSSAAGALVsrlrghppaKEILVPVLVATGRNV 313
gi 37677004  260 MQQpFLMGERAMNSLHqyllghtvaKEQQLEVLAVSSQNL 299
gi 149189328 259 MQQpFKIGERSVETVYefwqgakieSTQELKVLAVDKNTL 298
gi 14025556  264 FQEaVGQGIDGTQQVYnaltgapvtQDLALVMPLVTADKV 303

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap