Conserved Protein Domain Family
PBP1_ABC_sugar_binding_like_11

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cd06321: PBP1_ABC_sugar_binding_like_11 
Periplasmic sugar-binding domain of uncharacterized ABC-type transport systems
This group includes the periplasmic sugar-binding domain of uncharacterized ABC-type transport systems that share homology with a family of pentose/hexose sugar-binding proteins of the type I periplasmic binding protein superfamily, which consist of two domains connected by a three-stranded hinge. The substrate specificity of this group is not known, but it is predicted to be involved in the transport of sugar-containing molecules and chemotaxis.
Statistics
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PSSM-Id: 107316
View PSSM: cd06321
Aligned: 16 rows
Threshold Bit Score: 313.87
Threshold Setting Gi: 111017838
Created: 8-Apr-2008
Updated: 17-Jan-2013
Structure
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Aligned Rows:
 
putative ligand
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to the periplasmic transport protein receptor for D-glucose and D-galactose

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                    #                                                                   
YP_944112     28 KIGVSLGsmgNPFFVALASGAEAEAkki-npNVEVLALGydYDLGKQFNQIDNFIAaGVDLILLNPgDPNAIEPAIKraq 106 Psychromonas in...
NP_104671     40 KVGISVGllgNPFFVATIKGIEDAAkki-npKVEVTSVSadYDLNKQVSQVDSFIAaGVDVIMLNAvDAKAIAPAVKkaq 118 Mesorhizobium l...
YP_001601742  44 KIGVTVGslgNPFFIAAIRGITQQAkal-gpTAPVQSVSadYDIGKQASQVDSFIAaGNDLVMFNAvDYQAAAPLVRrlh 122 Gluconacetobact...
NP_406035     30 VIGVSFQelnNDYFVSMKEALEQAAnd---iGAKVYIADagHDVSKQINDVEDMLQkKIDILLINPtDSVGVQSAVMaan 106 Yersinia pestis...
NP_900047     25 RIGISVGaldNPFYQALARGAVQAAhrl-npGVRITSQSanFTLGQQQQQLRQLIAqKVDLILLGAvDSNAVAPLVRqar 103 Chromobacterium...
ZP_01075498   53 SIGISVAdlgNPYFVQLIESATSRAeslvgqPVKMLIRSdaYDLKRQITQLNYFIEqDVDLILLTAaDEEGIAPTIAkaq 132 Marinomonas sp....
NP_290721     29 SIGVTVGdlaNPFFVQITKGAELEArklagdNVKVTLVSsgYDLGQQVSQIDNFIAaNVDMIILNAaDSKGIGPAVKrak 108 Escherichia col...
YP_944110     27 TVAISLVdlsNPFFIMLAEEISAQLeaqvegQLTIYVHSsaYDLNQQNQQIKDFINkEVDIIFISAsASDAIEPSIIsar 106 Psychromonas in...
ABB10998      39 RIGMTFQelnNPYFVTMQKALNDAAas---iGAQVVVTDahHDVSKQVSDVEDMLQkKIDILLVNPtDSTGIQSAITqak 115 Burkholderia sp...
YP_700810     47 TIGVTLNaasNPFFLAEGQAIETAAae---kRVEVSVQYanADVAVQSDQIDTFIRqKVDSIIVDAvDSDGIGPALLrat 123 Rhodococcus sp....
Feature 1                 #                                                  #                   
YP_944112    107 kAGIVVVSVDtaak-gsdaTVTTDNvsAGAVACQYIVeklegkGNVIIQNGpqv-saVIDRVNGCKEVLKAAPgitiLSD 184 Psychromonas in...
NP_104671    119 aAGIIVAAFDvsap-gadvTVMTNNvkAGEEACQYLVdhtggkGDYVILNGpas-ssILERVKGCKNVLSQHAdikiLSD 196 Mesorhizobium l...
YP_001601742 123 dSGATVVAFDvgap-gadaTITTNNvkAGEISCQYIVdrlhghGDVVIVNGppv-taLSDRVKGCQSVFAKAPgirlLSS 200 Gluconacetobact...
NP_406035    107 kAGAVVVAVDaqaegpldsFVGSKNydAGFLAGEYLAkslggkGKVAILDGipv-vpILERVRGFEDAIKKYPdi-kIVT 184 Yersinia pestis...
NP_900047    104 aAGITVVAVDvdap-dvdgTVKSDNhlAGEIVCRYLAqrlrgrGTLMIQGGppv-tsVSDRIAGCHAALAAFPhiraVDD 181 Chromobacterium...
ZP_01075498  133 rAGIKVIAVDvkar-gadaTITTDNiqAGVIACEYLAkrmnyqGNMVIINGvav-ssVVERVAGCKSAIHAYPkivlLND 210 Marinomonas sp....
NP_290721    109 dAGIVVVAVDvaae-gadaTITSDNtqAGEMACKYITdrlkgkGNVVIINGppv-saVQNRVEGCQTEFKRHPdikvLSD 186 Escherichia col...
YP_944110    107 eKGIIVAAVDiesr-gadiSITSDNfqAGQLSCQYLVdrlggkGEIAIINGwttissTSNRVAGCRDLLKKYPgiklVSY 185 Psychromonas in...
ABB10998     116 kAGAVVVAVDanangpvdsFVGSKNydAGVMSCDYLAkviggsGEVAILDGipv-vpILERVRGCKAGLAKYPnv-kLVD 193 Burkholderia sp...
YP_700810    124 qANIPVVAVDvtai-gadaTVTSDNvqAGREACTYLVeqlggsGKVAIVDGaav-saISDRMQGCREALDAHPgi-eVVA 200 Rhodococcus sp....
Feature 1                                                                #                      #
YP_944112    185 DQDGKGSRDGGMSVMLGHLTrfSEIDAVFAINDpqAIGADLAAKQLkrdnIIITSVDGApgivaalknpdspMIQASGSQ 264 Psychromonas in...
NP_104671    197 DQNAEGSRDGGLKVFQSLLTrfDKIDAVFAINDptAIGAQLAAKQLnrseFIFTAVDGApdieke-lssgssMIKASASQ 275 Mesorhizobium l...
YP_001601742 201 TLDAKGSRDGGLAVGQSVMVrfDKVDAIFAVNDptALGVELAARQAgrhdFFLASVDGSpdveqe-mrggntLIAATASQ 279 Gluconacetobact...
NP_406035    185 KQNGKQKRDTALTVTENMLQsvPDLAGIFSVNDvgALGALAAIESNga-kVKLVSVDGQpeaike-ilkpnsPFIATSAQ 262 Yersinia pestis...
NP_900047    182 GLNAQGSSLGGQRAMQQALQrwPDMAAVFTINDrqALGVEKALLAAgrkqVLIGSVDGSpdiera--lrlpgQIVVSASQ 259 Chromobacterium...
ZP_01075498  211 QLNGTGSIDGGMKAMTYLMEayPKIDSVFSINDptALGAVRAAKQAgrddFILASVDGApfavkl-iqsgnsNWAATAMQ 289 Marinomonas sp....
NP_290721    187 NQNAKGSREGGLEVMTGLLAanPKIDGVFAINDptAIGADLAAKQAqrneFFIVGVDGSpdaeea-lkrensLFVATPAQ 265 Escherichia col...
YP_944110    186 SHNGSGSFSGGLESMTYLMLeyPNLEAVFAINDlaALGAEEAAKQSgnnkIIIASVDGSplfleh-lklkdsLLVATAAQ 264 Psychromonas in...
ABB10998     194 TQNGKQERATALSVTENMISahPNLKGIFSVNDggAMGSLAAIESSgk-dIKLTSVDGApeaiaa-iqkpnsKFIETTAQ 271 Burkholderia sp...
YP_700810    201 TQRADLTRDKAMNVASTILTanPDVDGFFGVNDptAIGISLAAQQKgv-dVKVVGVDGAkqltd---llgksSIIATSGQ 276 Rhodococcus sp....
Feature 1                                           
YP_944112    265 NpFVMASKAVELGYqimngevpeeSVILLPSELVT 299 Psychromonas ingrahamii 37
NP_104671    276 DpYVMAGQSLTMAAellagkkpaeATVLLDPKLIT 310 Mesorhizobium loti MAFF303099
YP_001601742 280 DpFAIATTATRIGFdiragrikpgIVRLLAPSLIT 314 Gluconacetobacter diazotrophicus PAl 5
NP_406035    263 FpRDQIRIALGIALarywg-anvpATIPVEVKLID 296 Yersinia pestis CO92
NP_900047    260 SpYLLGREAVKLGVklrrg-dtsvRHVTVPVGLVT 293 Chromobacterium violaceum ATCC 12472
ZP_01075498  290 KpSLMAKKAVEIGYqllqgkkvepNYILIPAELAA 324 Marinomonas sp. MED121
NP_290721    266 DpQVMAAKAVEIGYdilqgkpapkEPVLIPVTMID 300 Escherichia coli O157:H7 EDL933
YP_944110    265 FpRAIAQKAVILALqklretsaghTTELIPTELVT 299 Psychromonas ingrahamii 37
ABB10998     272 FpADQVRIALGIAIarkwg-atvpKAIPVDVKVVD 305 Burkholderia sp. 383
YP_700810    277 DpAQLGRSGLDIAVrlaggekvdsAPTLIPTVLVT 311 Rhodococcus sp. RHA1

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