Conserved Protein Domain Family
PBP1_ABC_ligand_binding_like_2

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cd06335: PBP1_ABC_ligand_binding_like_2 
Type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions
This subgroup includes the type I periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine-binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Statistics
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PSSM-Id: 107330
View PSSM: cd06335
Aligned: 27 rows
Threshold Bit Score: 388.145
Threshold Setting Gi: 126727710
Created: 18-Jul-2007
Updated: 17-Jan-2013
Structure
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Aligned Rows:
 
putative ligand
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to the periplasmic Leu/Ile/Val-binding protein with bound valine

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                   ###  
YP_523095     27 KIGLQGpltggsspMGVSMRDGAKLAVTEINahg-gllGRKIEMIERDDeaknERGVQIAQELINkeKVVATVGYINSGv 105 Rhodoferax ferr...
ZP_01388794   35 IIGIDAdfssgsasAGEAIHRGALIAIAEINekggvlgGRKLELNLKDHhgspTRSTDNLNDLSKekNLVAVIGGLHSPa 114 Geobacter sp. F...
YP_001189316  36 KVGLVAalsgqsakSGEALTRGLTIAIDEVNaqg-gvlGRPLQLVRRDDesnpSKGLLAARELIQreKVAVLFGGLDTPv 114 Pseudomonas men...
YP_269950     33 TIYLDAdfsg-ataSSLAIQQGITTALAEVDnq---iqGIEFGLILKDHransLRSRRNLEAFLAdeQALMVFSGLHSPp 108 Colwellia psych...
ZP_01109418   30 IIGIDAdlsavaieGGVAISRGVELAVDEINaag-gilGRKLKVISKDHrgnpARGVFNINQFSEmpHLLAVVGGVHTPv 108 Alteromonas mac...
YP_864125     32 HIYMDAdwsg-anpSSQAIEWGIRTALDERNnt---iaGHPVKIVRANHrgnnRRHLRNQQIFLDdaRALLVYSGLHSPp 107 Magnetococcus s...
ZP_01306343   26 KIYHDSdyss-hdqAAISIYQGFTTALAEVNhs---iqGYQIKVIKKDHrgnsKRSLRNMQQFLKdpQGLLILGGLHSPp 101 Oceanobacter sp...
ZP_01877271   22 TIYVDAdfsn-yyeSSRSIEVGILSSLHINKek---lhKTKIEVKRLDHrgnnRRSLKNLKIAADdpNTLAVFCGMHSPp 97  Lentisphaera ar...
ABK45143      32 RIGFDGayglknstSAQSIEMGLRLAIDEINtaggvlgGRPLALVTADNrsvpARGIENLKKFAAdpNLVAVVGGRFSPv 111 Magnetococcus s...
ZP_01743541   24 ELHIDAdysi-svdASLSIESGVRTALSEVGgq---iaGYQIDVVANDHrgnvKRSLRTMENFLEndRALAVVGGLHSPp 99  Rhodobacterales...
Feature 1                          ###                                                   #       
YP_523095    106 alasqrfyqeAKIPVMNNVATattitqqfadqpqnyVFRNSANDTIQSTLIVEEVIgrrkytKVAILADSTnYGQLGRAD 185 Rhodoferax ferr...
ZP_01388794  115 iiknqdlihrNRLIMLDPWAAatavven--gkspnyVFRVSVRDEYVGGFLVGQAVkqg-ykNLGLLLEKTdWGRGNEKY 191 Geobacter sp. F...
YP_001189316 115 slaivplanqMKMPFMGVWAAgtpitrn--gaadnyVFRVSAVDELVDEALVSYAQkhfatqKPGMILINNpWGESNEQG 192 Pseudomonas men...
YP_269950    109 llanksfindNDILLLDPWAAagpitrs--aseknwIFRLSIDDSNAGKFISKKAIeqg-frKPYLLLEDTgWGRSNKIT 185 Colwellia psych...
ZP_01109418  109 vlaeieviheKNILMLVPWAAgtpivdn--dktpnnVFRVSVRDAEAARVLIDYVKnig-lsNVALVLERTgWGRSNLAS 185 Alteromonas mac...
YP_864125    108 llankkfindHAILTLNPWAAagpitr---slapnwIFRLSIDDAVAGQVIVHHALtkrgfkKLVLIAEDTsWGRFNHQN 184 Magnetococcus s...
ZP_01306343  102 yiqnrqfineNSILLLVPWAAgspitry--pdgknwVFRLSIDDSKAGYRLAQFALdekackQPHLLLEETgWGKGNLIT 179 Oceanobacter sp...
ZP_01877271   98 vlankdfineHKLLLLNPWAAaapitrt--qskdnyIFRLSLDDSTVGQFLIESAIdihktkKPYLLLEDTaWGKNNWNT 175 Lentisphaera ar...
ABK45143     112 llqqlelvhhLPIPLLDAWGSadgitdh--aqspsySFRISLRDKYAMPIMLQYAAskg-sdKVALLVPNTgWGRSNTNA 188 Magnetococcus s...
ZP_01743541  100 yltnqkfinqNGVLTLLPWSAagpitrp-algddnwIFRLSVDDFKTAPFLVDEAMqggectDIGLVLIDTgWGRGNQAA 178 Rhodobacterales...
Feature 1                                                        #                         #     
YP_523095    186 LEKALaa-kgITPVATEKYnik--dvdMTPQLLKAKEA-GAQVVITYGIgpeLAQIANGMIKLgw--kVPMMGSWTLSMG 259 Rhodoferax ferr...
ZP_01388794  192 ITVALsk-lgRKPASVQWFylg--dtdMTTQLIAFEKA-GADAVIMVANapeGGAIVRHMALRpekvrLPIISHWGITGG 267 Geobacter sp. F...
YP_001189316 193 FRKALaa-rgMPVAGVERIegs--dldVVPQLSRLKQA-GADTLLLVANvapSAQVVKSLDRMgw--dVPVVSHWGPAGG 266 Pseudomonas men...
YP_269950    186 MTQALne-ssVKPIGLSWFnwgvgmnhAKVLLRDIKAS-GADVIFFVGNsaeGVTFVNAMIELpqstrLPIRSHWGITGG 263 Colwellia psych...
ZP_01109418  186 LTKAAse-kgIAFTSTHWInwq--qkdFSEDISAIRNN-KAEGIILVTNvpeGVVALDEIAKQel-tkLPIISHWGIASG 260 Alteromonas mac...
YP_864125    185 MSKKAne-ygMEELPVIWSnwgi-skaAAKIILRQAASmGADAVLLVVNpaeSITFATAMAELepqrrRPIQSHWGVSAG 262 Magnetococcus s...
ZP_01306343  180 LNDAIkt-rlGIAPDHTWFtwgtrfhqAKEVVKEIGEL-DTDCIIFVGNaieGEQFVKAMADLpvesrLPIISHWGITGG 257 Oceanobacter sp...
ZP_01877271  176 LTQAItk-sqISSAGSDWFkwnlsdyaTEKIILNLKES-NADSIILVGNsneSASIVNAISKSnl--nIPIISHWGVTGG 251 Lentisphaera ar...
ABK45143     189 AERYIkkhpeTQITLIHWYnwg--ekdFSAAYQAVLDS-GAQALVMVANdleGSIIVRHVSSRpqaerLPIISHWGVTGG 265 Magnetococcus s...
ZP_01743541  179 LSAVLnt-rgSPPVFSQFFgsninatnANILAKDLAVS-GADCAIILSDwdnGAEVMLALHERap--nARIFSHWGIMGG 254 Rhodobacterales...
Feature 1                                                                                        
YP_523095    260 NFid---naGKNADDALMPQTfiqeg---ntpkRKSFIDAYQKTykvtr-----ipspvSAAQGYDSIYLLAAAikqags 328 Rhodoferax ferr...
ZP_01388794  268 NFrgs-agdGLKGVKLQFLQTysfmn--argkkAREVINRYKTMfkagser--eimapvGTAHAYDLVHILALAidkagt 342 Geobacter sp. F...
YP_001189316 267 RFge---laGPNAGRVHFIQTytfsq--egdarGEAIFAALQKRypeiksl-advtpavGIANAYDALHLTAQAiaaags 340 Pseudomonas men...
YP_269950    264 NFsekvtasQREKIDLQFIQTnfsfindnlsvtAKNVLALAVKSnstikhp-tdikaqtGFIHAYDLTKIVIAAikqvkl 342 Colwellia psych...
ZP_01109418  261 QFasa-lanPIGMYDISVLQTfhfsh--qknsqSKQLLEAYHNKyglvdsq--aiggvtGLAHAYDLIHLIAAAadkags 335 Alteromonas mac...
YP_864125    263 SFsqkvgenVLKVLDLEYVQTrfsflngmlsehAKQVLARAMRLfpdaiktpqhirppaGFKHAYDLTRILLAAadqvql 342 Magnetococcus s...
ZP_01306343  258 DFhekipheIRSKIDLNFIQTcfsflpepqnalSKKVFESTKILfpdaineprdiqaqtGFAHGYDIGKILIQAlnqini 337 Oceanobacter sp...
ZP_01877271  252 KFyek-ltpKARQHPFLFIQSsldl----sktsDNEIISKASKLfpndfdn-hyikapsGFIHAYDLTSLLLEAsqnkld 325 Lentisphaera ar...
ABK45143     266 AFvea-cgpALQAVDFSVVQTfsmlr--sqgpaLTRVVTLLHDKlgikdpa--kmdspvGFAHAYDLVHILARAinlags 340 Magnetococcus s...
ZP_01743541  255 AFaqrvpndIRADLDLRVLQTcglr----readGSDILSAALRAadetfdslsdvpaqtGFVHGYDLTRIFIAAvrqast 330 Rhodobacterales...
Feature 1                                                                  
YP_523095    329 teg---------pkvlaaleDLKTPVEGvvtTYNKPFSKAd------HEAITLNMPVI 371 Rhodoferax ferrireducens T118
ZP_01388794  343 id----------rakvrnamEKINSYSGlvkTYRPPFTPQr------HEGLNASDYHL 384 Geobacter sp. FRC-32
YP_001189316 341 te----------gpairdgyYGIQRYEGlikTYEKPFSAEq------HDALGVDDYVF 382 Pseudomonas mendocina ymp
YP_269950    343 tgdrn----qdkslihhaleHLVQPVTGllkTYKGPFTPYsksqfnaHEALTIEDYAM 396 Colwellia psychrerythraea 34H
ZP_01109418  336 ie----------idklrsalESLQDVSGavkHYDAPFTKEr------HDALWSKDYFM 377 Alteromonas macleodii 'Deep ecotype'
YP_864125    343 sgdvk----qdrlllhhaleHLQTPVQGlikTYHMPFSPPksdtsddHEALHIHDFTM 396 Magnetococcus sp. MC-1
ZP_01306343  338 kgpmd----kvrselrdkleNLDKPIEGlvrTYLQPFTKWqatkpdaHEALGLDDICM 391 Oceanobacter sp. RED65
ZP_01877271  326 krhie-----lresvkneleNLKIPVIGllkTYSKPFSPYrinqafsHEALGVQDYRM 378 Lentisphaera araneosa HTCC2155
ABK45143     341 id----------rvavrdalEQVRDYAGlvrNYDHPFPAEd------HNGLKLEDVFM 382 Magnetococcus sp. MC-1
ZP_01743541  331 tqewngnivakrlavrnaleQLDSAVEGilkTYATPFEPYttenidaHEALGSADLCM 388 Rhodobacterales bacterium HTCC2150

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