Conserved Protein Domain Family
PBP1_ABC_ligand_binding-like
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cd06336: PBP1_ABC_ligand_binding-like 
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions
This group includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Links
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Statistics
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PSSM-Id: 380559
Aligned: 60 rows
Threshold Bit Score: 273.34
Created: 19-Jul-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
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putative ligand
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to the periplasmic Leu/Ile/Val-binding protein with bound valine
Scroll to Sequence Alignment Display
Sequence Alignment
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Format: Row Display: Color Bits: Type Selection: 
Feature 1                                                                                    #
SFJ25803   38 NIGWSGPQSGgaalYGKNTLDGMNMAIDDINAAGgikv-gkdNVKLKLVALDDky-lpNETATNARRLKQenDATIIFTP 115 Thermoflavimicrobi...
KRQ89826   30 KIGQIEALTGptatYGWMSAQGAKLAVEEINAKGgfkv-gdkTYKLQLTQADTrg-epREATVQFRKLMEe-NVRFVFGP 106 Bradyrhizobium val...
OGB92116   17 KVGAVFSLTGklalLGVPSANAVKLAVKEINDAGgitv-rgeKVKIDLLLKDDrg-vpAEAVAAAIELITknNVKFIFGP 94  candidate division...
OPX38820   32 KIGFNAPLSGpaaaWGLPGMEGVSIWVDKINTSGglki-ggkNYKVKIIKYDNeg-igSKALLGARKLVLedKVVAMLML 109 Desulfobacteraceae...
OGN96941   39 KLGFLCPLSGaaagWGLPGLTGLNIWADELNAQGgmlv-gdkRIPVEIITYDDey-vpSKALEGARKLILqdDVDMLIPS 116 Chloroflexi bacter...
SMC11230   36 CVGMNGPLSGpsagWALPGLTGLNLIIDQVNAAGgiea-dgkTYKVELRQFDNey-tpSKALQGAKELVLqhDCKQIFGI 113 Roseovarius aestuarii
PHS32109   37 KIGMNIPMTGdyapWGLPGLYGCEIIADDINAAGgini-ggeNYMIEMVAYDHay-dtEKAVQGYKKLVMedEVKMVMML 114 Methylophaga sp.
KQV39340   37 KVGALVPLTGdlslWGLPAKNGADVWASRVNKAGgikv-ageQYNVEVVSFDGay-iaEKTLQGARAFQDq-DVKFTMII 113 Rhizobium sp. Root...
SOD50213   34 KVGVIQPQQGdcaqWGIPITRGVQLWAEELSAGSgfvagdgkTYSIEVSGYDNvcyaaGDELRAARRAILddGVHLLLQT 113 Rhizobium sp. AN6A
KUM25014   28 KVGFLGPLTGpirsWGLPGLNGCRIWVDWINRTGgmli-ggtRHNVQLLAEDCgy-dpEQAAEGARRLVQdhGVGLLMML 105 Mesorhizobium loti

Feature 1     ##                      ###                                                     
SFJ25803  116 HSggvfam---qqfnvQENFLIAAYTSepk--vtEVKNPLMVRIp-------PTYNIYPKTFSKEMMKRfg--kKVALIP 181 Thermoflavimicrobi...
KRQ89826  107 FLtnifnaiepiakqnNGKFLLFAGATsahsalgKPDHDYLFRTwn----wdAGPSGFGKLMVDYLKKQdt--kKVAMLF 180 Bradyrhizobium val...
OGB92116   95 IGsvvgmpv-vevtrkERVMQFTPLTQvgp-lmgKPGYEYLFQTynwefgpqGRVNTYAPFIVKIAKQEgv--kTVAFLD 170 candidate division...
OPX38820  110 GGapsavv--qpfltkNKIMAFVLIASd-----iAPDRPYLMDVtd----nfPIYHLLHTEYIAEAHPKa---kTAAIIS 175 Desulfobacteraceae...
OGN96941  117 VTggstsai-qqfateHKTLMIGMEAVd-----nGPERTYLLTGge----gyPMYHAIHMYYIKENYPQa---kKLALVC 183 Chloroflexi bacter...
SMC11230  114 GGttadaq--apfltqAKVFYSPLIVSd-----iNPNRPYVLAGsd----vnSRGEMIRPAYMRTAYPDk---tRYAIIA 179 Roseovarius aestuarii
PHS32109  115 GGstvasv--lpwaqrKKMLTTTLLPSd-----iTEKSEYLVATc-------ESHPLYNVTGVEWLAENfpeakTAAIVT 180 Methylophaga sp.
KQV39340  114 GGddwsal--qdfsnrNKMLTATLYVSd-----lNPDSTYLIAPve----ahPFYFGLGVEYLRKVEPNi---kTVSLCA 179 Rhizobium sp. Root...
SOD50213  114 FTpscrqal-gplsneTKSLITAYGGGf-----lSKDFPFLVGGhtg---qpMANMLAISHMIEKHPNAk----RVAIIT 180 Rhizobium sp. AN6A
KUM25014  106 GGdtfrpi--qdylmsRKILTSTLLPSd-----lSPDTPYLIAPs-------EIHPLYNVTAVEWLARNrpelrRVAMCS 171 Mesorhizobium loti

Feature 1           #                                                     #                   
SFJ25803  182 GTHq--YAKDWTALFKKTWIGLg-GKIVAENPVdynkesdFSSAVTKALSSkPDVLFVGGAsq-pTALIIKAAREQGFkG 257 Thermoflavimicrobi...
KRQ89826  181 QNDa--FGKTAVDIYTALFKDA--GIELKVELFepg-tkdFSAVLAKLATGkPDFLFPGYSda-vLYDIVRQATESGFaN 254 Bradyrhizobium val...
OGB92116  171 STDd--YSQSILDAYVPKVKELg-LTVVAVERYdragttdFYPQLNKLKALkPDALIWGYTde-sGKLIIRQSLEVGVtK 246 candidate division...
OPX38820  176 QDDe--IGLAAIAWSEAGFEAAg-IEVVYSKPFgve-ttdFAPIVTAALAKkPDIISTGASypefQALIFEQAYTQGWkG 251 Desulfobacteraceae...
OGN96941  184 QDDe--TGRYGAAWVLAAAQAHg-FDVVYTNMFsie-tldFAPVISAVLATnPDVISLGPTwpefRIAMVEQLYHQGYeG 259 Chloroflexi bacter...
SMC11230  180 QED---PGAYTGQAWEVGAAKAvgFEMVYDSFYsae-ttdFAPVITAVLATnPDIVSLGLSwpdfIPLLMEQLYLQGFtG 255 Roseovarius aestuarii
PHS32109  181 NNDa-eYGLQSAAAYKAAFEVEg-IDVVDVNLHgfd-itdFAPIVSSILAKnPDIFCMATSf--yVTPLMEQLYHQGFkG 255 Methylophaga sp.
KQV39340  180 QDDv--TGRSSLAYWRAGFDAHg-FEIVNDQYFdna-ttdFAPVVSAMLAGkPEAVCIDTTypsvALLLVEQLFTQGYkG 255 Rhizobium sp. Root...
SOD50213  181 TDSsfaSAARAYVQAGCAVHADk-VEIVYDNSFgatatndMLGLLTPVAEAnPDIIYEGGLapgqKAAMISTMEQLGFqG 259 Rhizobium sp. AN6A
KUM25014  172 QTDa--LGLPSLATYRAAFAAEg-IEAVAEVRYape-atnAEEIVGAMLAGnPDILCWCTSyepmVHALTEAAFRSGFrG 247 Mesorhizobium loti

Feature 1          #                                                                          
SFJ25803  258 GVIMMDqakleev-eqvlkdPKLLEGVIGVRPaskw--------ptegTKKVVERYKKKFgadk------iptsEVLYNY 322 Thermoflavimicrobi...
KRQ89826  255 RFFLVRgsigp-----alknKDAIEDYIAYVPkyfeqa----ektepkVKAFIENYKKTYnrefpy---dqaplCSSSCY 322 Bradyrhizobium val...
OGB92116  247 KFFTSQgpsei----palpyKDQVDFYTWVIGtrsps------sddpkVKAFVQRYKALVgqepg-----psgiWSFTFY 311 candidate division...
OPX38820  252 IVTSACwdfkai---vakvpTGWMDGAVSGFPdfddp------klskeHNEFWKAWRAKYpt----------hgFSEIVW 312 Desulfobacteraceae...
OGN96941  260 IVEASEwepddemakvpeeyLETIKCIGHNPFadps--------apaaMKELYAKWVARYgpgapedvgraaysIDWLYT 331 Chloroflexi bacter...
SMC11230  256 VVAANYiehdpi---lqrvpAEWLAQVRAIDSyqlfddp--wfgvpsaQHDFFREWDARYgengsdnlgrpmngIDWLYA 330 Roseovarius aestuarii
PHS32109  256 KIISCTldyyde--iiaktsKEFVEGTIFQFPdfddprlndeginfpdPGGFDAKFRKDHpn-----------dWSAVAW 322 Methylophaga sp.
KQV39340  256 RILHAGfellpd--mvkrtsKEFMEGSIAFFPrfddqtiaqaatgfsdPSGFYNEYNAAHpn-----------eWNNTSW 322 Rhizobium sp. Root...
SOD50213  260 IYGSETweigfi---eqagmLPAVAGRLFSSPaidaqe----psfsprAHAFYKRYVERFgaae-------wasWASSAY 325 Rhizobium sp. AN6A
KUM25014  248 QIISCTadnyrr--laertsIEFVEGFLFQFPdfddpelrdkafffnrPAEFFDEYNRRFpd-----------sWTAVSW 314 Mesorhizobium loti

Feature 1                                                                     
SFJ25803  323 MAVHLFAKAMELAGttddpaairakinda-ckqlsedkiplsvkGLSEDGSLItt---pKAMMM 382 Thermoflavimicrobium dichotomicum
KRQ89826  323 DHVHMLVQAMQSAGtvddvakirtalls--msydglwkikydktGEEVFGFDVvhvrkgGSVEV 384 Bradyrhizobium valentinum
OGB92116  312 DPLYMFAKAVEKAGttsdldkirqalig--mtydgvmkmtvskeGRFVHDYFIgmikkgKTELL 373 candidate division NC10 bacterium ...
OPX38820  313 EYMAALDVWAYGARkagtvesekvykalkackevphsfgpgvwwGKEIFGRDNllv-ptWPITE 375 Desulfobacteraceae bacterium 4484_...
OGN96941  332 AQAMIWEEGVRLAGtldgtavrdallaq---esiphlggtavwwGDEVFGVSNha---lVPESV 389 Chloroflexi bacterium RBG_13_51_36
SMC11230  331 PMLEVYLKGVEKAGtldadkvleairsf---dhvqtiqgparitGEDLWGGKNmis-ppVPTTA 390 Roseovarius aestuarii
PHS32109  323 EYPAILLNWVEAAKaagsveppavlaamksnpnpefvfgggkwwGSQLWGRDNavv-grWPVVV 385 Methylophaga sp.
KQV39340  323 EFPAALEVWKQGVEaagsfdadkvlesmk-atppkhifgeakwwGKDLFGIDNall-gnWPIVV 384 Rhizobium sp. Root1212
SOD50213  326 ATMVGLEIGLKAAPavdaesilktlygm--ssidhplfgqskwgGEEIFGANHhl---yTPQPI 384 Rhizobium sp. AN6A
KUM25014  315 EYVATLDLWHAAVEkagtaapvsvlaamkhgglgehafgmakwsGSDLFGNDNalv-gdWPVVR 377 Mesorhizobium loti

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