Conserved Protein Domain Family
PBP1_ABC_ligand_binding-like

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cd06337: PBP1_ABC_ligand_binding-like 
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions
This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. Members of this group are sequence-similar to members of the family of ABC-type hydrophobic amino acid transporters, such as leucine-isoleucine-valine binding protein (LIVBP); however their ligand specificity has not been determined experimentally.
Statistics
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PSSM-Id: 380560
Aligned: 30 rows
Threshold Bit Score: 313.854
Created: 30-Jan-2008
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative ligand
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to the periplasmic Leu/Ile/Val-binding protein with bound valine

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
NP_773047 134 RIGYISPKTGpfapFAEADDFILDQVRkslagg---lsvggsKYEVEIIARDDqsspdRQSNLAAELINKe--------- 201 Bradyrhizobium jap...
OHV41803  110 RIGLVTPQSGalssFADADLFVTDVLKnfftsng-glsvggtTHPVEIYIRDSqs-tfARAAKAASQLISd--------d 179 Frankia sp. EUN1h
CDX32982   39 RIGFVSPSTGplagAAAGDPFVLENLRsalaggi--tvdggsKRAVEIVVRDCqs-naNRSSEVAADLILr--------e 107 Mesorhizobium sp. ...
OHV38897   95 RIGMVSPQTGalrnFADVDNHVVERMRnqfkdg---irvgrnTLPVEIFVRDGqs-drNRAASAAADLIFt--------d 162 Frankia sp. Cc1.17
SJN08621   14 KIGFISPITGayagFSDGDPYMLSVVReqfadg---ieingeTYQVEILDRDSgs-dpAKAGELAQQLITg--------d 81  Leucobacter sp. 7(1)
OFV84786   92 KFGFLAPITGplagFGTADGWCVDRWKeyaaags-lvtadgkAHPMSVVVRDTqs-daNFAGTVAADLIQn--------t 161 Acidobacteria bact...
SEQ01368   38 RIGYINPTTGplagNGEGCDWAVKQITdyvdqhp--itvdgkEMDFEVIVYDSes-daNKCSEMTQKLIEe--------d 106 Lachnospiraceae ba...
ODU57320   29 RVALISPATGvlsaFGATNTYVHGLFAerlaaglptrhlgqrAVTLELYDAASsp-arAAEIAAALAANGthlvlatatp 107 Comamonadaceae bac...
OFW56744   74 RIGLVSANSGplalFGTADDWWTEYGLaavsdgv--vcgdgkLRHVSIVRQDCrs-raDLAGKVARSLIAd--------a 142 Actinobacteria bac...
OFV79759   91 KVGVVMPKTGslaaFGPADEWAAGLTSevvgdgi--ilgdnkKHPIAFVLRDCqs-dsNRAAQIAGDLIQn--------d 159 Acidobacteria bact...
Feature 1             ###                    ###                                              
NP_773047 202 NIDLMLAQVSIgpavs--qqcelNGVPCISTMGPWQAWMFPMKGDPakgfkNVFHFFWGIEDIAAVYLDIWKdad----t 275 Bradyrhizobium jap...
OHV41803  180 QVDIVLVGATSdtvnpvadqcevNGVPCISTMAPWQSWFVGRGGDInkpftWTYHFFAGLGEYFSAFSSMWGqaev--ps 257 Frankia sp. EUN1h
CDX32982  108 GVDIMCASIHSltvtpvadqcelNGVPLVSSITPWETQVSGRGATPdkpfrYQLHMFWGFSEVSATYMDIWRqlk----t 183 Mesorhizobium sp. ...
OHV38897  163 RVDVVLVGGTAdnvnpvsdiceaQGVPCISSAVPWEAWFYARGGDPqrpfvWTYHLNWGMADLRAAYRGMWSple----v 238 Frankia sp. Cc1.17
SJN08621   82 QVDLMMATATPetvnpvvaqceaNATPCLTAIAPWQAVVYGAGFTEenpmkWSHHFFFGVEGFGEVERQAWEqie----t 157 Leucobacter sp. 7(1)
OFV84786  162 KVDILMAASTTdttipaalqaeaLGCPCVLTDSPSDSLLRGVGPDPfteykWWRFVFWDNKALMNASIALYTdpal--st 239 Acidobacteria bact...
SEQ01368  107 DVDMIIAIQTPntvipvvevaerYGVPCIASQAPIDPVAHSRDEFN-----WTYLSFYTLDDVYESQRAMWTvaghgids 181 Lachnospiraceae ba...
ODU57320  108 EICNPVADVCEa-----------AGVPCVTSVVPWQAWFHGRKGNPnkgfqWTFHFFVGLEDFAGVYGSLFArag----l 172 Comamonadaceae bac...
OFW56744  143 RVDIILSAGSSdvvnavagqaetLGCPSISDFVDWRAFIFDRGGAIdrpftWTFAHAIGVEDIGANFLSMWRqvp----t 218 Actinobacteria bac...
OFV79759  160 KVDILLGSVTPdvtnpaaeqaeaLGTPFLTSYAPWQAFVFGRGADLntafkWTFAHSMGTEQMGYSIIGAVDqip----n 235 Acidobacteria bact...
Feature 1                    #                                                               #
NP_773047 276 nkVVGSVFSNDv---PGNAMGDAKLGMPgafa---------kagYKIVDVGRFPVGaddFSTHIQAFKKEGvEIVTGLFN 343 Bradyrhizobium jap...
OHV41803  258 nhTVGALWPDDv---DGRTFANQGLPFRqslaatnlelasagdaVGTTDYHLYPPGtksFTDIIDRFKDQNvQIVTGIPR 334 Frankia sp. EUN1h
CDX32982  184 nkVVGALWPNNt---DGQGFAKGFPPLLqe------------qaYTLVDPGRYQDLtddYSSIIQLFKKSGvEIISGNVL 248 Mesorhizobium sp. ...
OHV38897  239 prSVALLLPRDq---EGDAFANVDYGLPklgee-------gfqiVGRPEDYRYNVDarsYSSIVRNIVENEvSIIAGVPN 308 Frankia sp. Cc1.17
SJN08621  158 nkRVGVLWPNDa---DGGAFRDPDGGYAqfae---------efgYTIVDPGPYENGtqdFTSVIQTFKDQDvEIIAGIPV 225 Leucobacter sp. 7(1)
OFV84786  240 nkVVGCLWPNTlegnDRRAFYDAPLKDNg---------------FKIVDGGNFTPGmedYGTIVNLFKSEGcEILQGLMF 304 Acidobacteria bact...
SEQ01368  182 gaKVGLLFANDa---DGTAWHDIFVDRLae------------dgYTVVDPGQYPSGttdFTSLANTFKTEDiDVIAGTNI 246 Lachnospiraceae ba...
ODU57320  173 grVVGGIWPDDi---DGPAFREAMPQALaq------------hqLTLFDPGRLQLAapdYTGIATRLRDAGvQMLTGVLP 237 Comamonadaceae bac...
OFW56744  219 nkKIGLLLPDDa---VGRLWSDATSGLPpmls---------aagYEYALLALYPPAtedFGAHIDEFKKNGcEICCGAMA 286 Actinobacteria bac...
OFV79759  236 nkMAALITMNNp---DGNAWLDEQFGTPvalq---------kygYELVASAQFNLGaedFTREIATFKKAGaDVLIAAMH 303 Acidobacteria bact...
Feature 1                            #                                                        
NP_773047 344 ppeWATFLNQSAQMgfkPKVCTVAKAllfpg-gvaalGPRAEGMSTEIWWLPSYPFRSsltgqtAAELAASYQQATkr-- 420 Bradyrhizobium jap...
OHV41803  335 aadYIQFQRDAVDQkffPRIITLSKGvlfdtdlkvlgGTVADALTTEMFWSXSLQTRSfltnwtPAQLADQYQKASxq-- 412 Frankia sp. EUN1h
CDX32982  249 apdWTTFWTQAAQQgfkAKAATTAAAlafas-taeqlGPLAQNHSFDLFWHPTFPYKSsitgqtAADYAAAFESSTgr-- 325 Mesorhizobium sp. ...
OHV38897  309 vtdFSAFWRELNEQnyrPHIVCLSRAllfrd-dlqafGTAAKGFSTEVGWSPRHQFRSyltqrtAEEIAAEYNDDKgr-- 385 Frankia sp. Cc1.17
SJN08621  226 ppdFVTFWTQSAQQgfsPKAATIGKAlffpatvpsipNDLGVGLGFTTWWGPTFPYESsfggmtPQEWIDGFEASPegeg 305 Leucobacter sp. 7(1)
OFV84786  305 ppdWANFWRQCYQTgyiPKVCDIGIQtlfpttmealgLQEGIGICGQSWWHPTSPYKSsltgetCAELCVEYETRTgq-- 382 Acidobacteria bact...
SEQ01368  247 ppdFMNSYNACISAgveVDAVTMGKCclles-dvnalGDLSDGIMTQVWWAPTNPFTSeltgmsSEKLAEQYAADNdg-- 323 Lachnospiraceae ba...
ODU57320  238 ppvALAFFEAARKVgyqPRMASIAKAfpfpe-tvaaiDAPGMALTNEVWWSPAWPFRSgwtgatSQQVAQEYEQRTrq-- 314 Comamonadaceae bac...
OFW56744  287 tadLITFWKSAHAQgymPKVVTMAGAllfpq-aleaiGATASNLTAECLWHPSWPYADsitgrtARELADDYVSKTg--- 362 Actinobacteria bac...
OFV79759  304 ppdFTNFWKQSLQQgynPKIPSGGLGitmpe-glrglGDTAIGLIIEHGWTRDYPYVDpltgmnCPELSARWEKDTgl-- 380 Acidobacteria bact...
Feature 1                                                                                     
NP_773047 421 -eWTQPIGVAHALFEAGVqalkasgdpkspn-kvveslrklktdTVIGNLDFGGs------------gIANVSkiRVVGG 486 Bradyrhizobium jap...
OHV41803  413 -gWSQQLGTSLALFDVAAqalakvnslddkkaiadvlknnftarTIVGDVKFGArr----------dvPQNVAtlPLNGG 481 Frankia sp. EUN1h
CDX32982  326 -qWNQIIGTVHATLETAIdtlkrsgggdre--anrealfktnlpTIQGPIVAGSg------------pAPNVVitPLTGA 390 Mesorhizobium sp. ...
OHV38897  386 -pWSPILGFTHAMFEVLAqalvtvesidepqgiadaisrlqqarTVVGPVTFGDqak---------qlPKNVAsvPLAGG 455 Frankia sp. Cc1.17
SJN08621  306 ltWNQATPENVALFELAQaalqavddprdkg-alneaiadlnmmTLAGQVDFTDg------------pFPGIAviPTAVG 372 Leucobacter sp. 7(1)
OFV84786  383 -qWTQPIEHYMLFEWAVDvlkrtsnvddke--evmkniastkmdTIVGPIDFTSpvtkgst-evgkrnFPNVVasLMYMG 458 Acidobacteria bact...
SEQ01368  324 rvMPQPTAYAYEALELAVhtfnntksmdke--diraslagldvdTIVGHIKYDQem----------ngLPFARt-VLCGG 390 Lachnospiraceae ba...
ODU57320  315 -pWVQTLGFSHALVDLAAqavqeaeaatrq--glvqalrrikakTVVGPLGFVGrf-----------pSLNVCstPAVGG 380 Comamonadaceae bac...
OFW56744  363 -dQWTAAIAQYAKFEWAIdvfrrtrsiidkd-avvaqvrttqlrTCLGAIDFGApvgadi--attrrpAENVCkaAVGGA 438 Actinobacteria bac...
OFV79759  381 -qEQLSIGFLDKFAWTVDvlkrtkdpddke--tileaikttkmdSITGPIDFTApidsdptttdsfrpHPNVSkpVWTGA 457 Acidobacteria bact...
Feature 1       
NP_773047 487 QW 488 Bradyrhizobium japonicum USDA 110
OHV41803  482 QW 483 Frankia sp. EUN1h
CDX32982  391 QW 392 Mesorhizobium sp. SOD10
OHV38897  456 VW 457 Frankia sp. Cc1.17
SJN08621  373 QW 374 Leucobacter sp. 7(1)
OFV84786  459 QW 460 Acidobacteria bacterium RBG_16_64_8
SEQ01368  391 QW 392 Lachnospiraceae bacterium NE2001
ODU57320  381 QW 382 Comamonadaceae bacterium SCN 68-20
OFW56744  439 QW 440 Actinobacteria bacterium RBG_16_64_13
OFV79759  458 QW 459 Acidobacteria bacterium RBG_16_64_8

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