Conserved Protein Domain Family
PBP1_ABC_ligand_binding-like

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cd06340: PBP1_ABC_ligand_binding-like 
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in transport of amino acids, peptides, or inorganic ions
This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in transport of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, their ligand specificity has not been determined experimentally.
Statistics
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PSSM-Id: 380563
Aligned: 133 rows
Threshold Bit Score: 270.199
Created: 20-Jul-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative ligand
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to the periplasmic Leu/Ile/Val-binding protein with bound valine

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                    #
BAA81537   37 KIGVILPLSGrlaeTGADLRRGIEFAVDEInsqggvkacgGAKLTVVYGDSagkpeTGAAEAERLISQe--GVIALVGAY 114 Aeropyrum pernix K1
OIO99089   42 VIGSLEPLTGahavFGTEAKIGTEIAVDHInaaggikslnGLKLKLVTEDAge-naDSAKLGAESIISk-hHPVAILGLY 119 Anaerolineae bacte...
OLB78368   49 DIGLMGPFSGpwaeHGQLMRIGAEMAIEDInkqggikslgGAKLNLVVADTgp-siETTTNAAQRLLSq-rGLSAFMCCF 126 Alphaproteobacteri...
OLC58223   34 KIALVVPLSGrwarQGQLKKMGAEMAIAEVnaqggikslgGAKIVLREADAgd-svEKAVSAAQRALTr-eKISAGIGSW 111 Candidatus Rokubac...
KQZ13370   35 KVALIAPMSGpwarQGELMKKGAELAIKDInaaggveklgGAKMKLMIFDAgd-ttEKAKNAAQRMVSqepDLVGVSGAW 113 Mesorhizobium sp. ...
OFW51835   38 VIGCLEPLTGahavFGTEAKIGMELAVQHInesggiqslgGIPLELVTEDVge-daMSARLATESLISk-hHPAAVLGLY 115 Actinobacteria bac...
OZI45182   33 SVGLIAPMSGiyarYGQVMRMGAEMGVKDIndqggikalgGAKLKLIVVDSgd-stEKAKSAAERMVAdypGLVAATGAY 111 Bordetella sp. AU9919
OJW27258   38 KIGMLMPLSGpwarQGILEQMGARMAVDDVnaaggiksmgGAKLKLVEYDTqg-saEQAKDGAQRMVAqepDLVGGFGCW 116 Rhodospirillales b...
PCJ39771   37 KVGLIVPLSGpwarPGQVMRVAAELAVEEIneqggiaalgGAPLELVVYDAgd-nvERAKNAAQRMVAeepDLIGAVGAY 115 SAR86 cluster bact...
EFH11299   32 RLALLTPLSGpfarQGELERLGAVLAVEDInrqggikalgGARLELSIADAga-nvEQVTAAAQRLVAd-rGLVAGLGAW 109 Roseomonas cervica...
Feature 1     ##                    ###                                                     # 
BAA81537  115 QSsvtktasevaerYQVPFINPDSTspaltergykWFFRVTPHDEMFAAQQADFIDwlnqky-glnlrTFAIIHEDTeWG 193 Aeropyrum pernix K1
OIO99089  120 ISrmtiaasevterEKVILVADALVdsvtt-sgrqYLFRPAPKASQHGASAVQFVVdsakka-gldftKVAILNEDSsFG 197 Anaerolineae bacte...
OLB78368  127 LSsfslaaseigerQQVPMLTFSYSdelvr-rgykYIFRDSSGADIQVRAAIKLLQgqaaan-grkieSAALIGDNTgAT 204 Alphaproteobacteri...
OLC58223  112 LSsftlgvtevaerLEVPWFTLSYAdsite-rgfkYTFQSSPVSSAQAEQALEQLVeiakrn-nqpikKAAIIGDNTaAT 189 Candidatus Rokubac...
KQZ13370  114 LSsftlsvsevterAELPMVTLSYSdqits-rgfkYIFQMPPTGVKQAEDALPALMevaqkatgkkptKTGIVSDNTaSS 192 Mesorhizobium sp. ...
OFW51835  116 ISrlttaaseiterERVILVADALVdgvte-mgrqYLFRPAPKASMQGRSAVEFVLeaakks-gvtveKIAILNEDSsFG 193 Actinobacteria bac...
OZI45182  112 LSsftlaatevterAELPMLTLSYSdlits-rgfkYVFQTSAPAGKQAEIALPSILdlaqqasgkrpkTVAIVTDNTaAS 190 Bordetella sp. AU9919
OJW27258  117 LStftlaatevterAELPWLTLSYSdlitg-rgfkYVFQSSPTADRQAEEELPMIVelaqkatgkkptKVAIVGDNTaSS 195 Rhodospirillales b...
PCJ39771  116 LSsftlavtevterAEVPILTLSYSdlits-rgfnYVFQTSASGAVQSSGALPVLMdmaesasghrpeTIAIIMDNTaAS 194 SAR86 cluster bact...
EFH11299  110 ASsftlaatevterARLPWITLSWAdsite-rgfhYVIATSPPSSSIIPAALRPLLamaeraagkkpaTIACINDDTaVN 188 Roseomonas cervica...
Feature 1                                                          #                          
BAA81537  194 SKVAEAWKKYFtq--hgYTLVEEVSYhaatvtsLDSEVQKLKAAnpdILLAASYiq-dAILLVQTMKAQnf---aPKVVL 267 Aeropyrum pernix K1
OIO99089  198 RSNATGAMDAAln--ngLTIVYQKEYpyd-itdASSIVADIAAAkadFVVHCPYft-dAILFAKTFRETgn---iPKFIV 270 Anaerolineae bacte...
OLB78368  205 VAYFKSLNEVLpq--nsVKIVLNRVWtpp-ltdAIPVALALRDAnpdIIFLGATtfddSVAIVRGLNATr----vKKLML 277 Alphaproteobacteri...
OLC58223  190 VFFFKPLREKLlka-kgIEVVVDEIWtpp-ladATAIVQKIRATqpdIIFYGATnfpdSIQVLQKVKEFg----vKSPIQ 263 Candidatus Rokubac...
KQZ13370  193 VSFAKPMREGGlka-mgIDLLFDETFtpp-ladATALIQQARSKrpeFLIMLGTsvpdDKLMLEKVNEFnlg-ggRMPII 269 Mesorhizobium sp. ...
OFW51835  194 RSNAIGAVQAAld--ngLTIVYQKEYpyd-itdASSIVHGIATAkadFVVHCPYfm-dGIIFAKSFKELgk---iPKFIA 266 Actinobacteria bac...
OZI45182  191 LSTVKALKDGLlkk-ngLELVVDETFtpp-ladASSLIQRVRSRrpdLLFFLPTvisdAKLILEKMNETnvk-vpVISFG 267 Bordetella sp. AU9919
OJW27258  196 VSFLKPIREHVlkd-lgITAVADEIYtpp-ladATTIVQRVRSTrpdFVLFQSTnvpdDKLLVDKFAEMnl---kSDRLP 270 Rhodospirillales b...
PCJ39771  195 EAFVKPFFETNileeygLELVVNEVFtpp-lanATSLIQHIRAEqpdLLLLLPTaisdTKLLLEKMNEFrlgrglIPTIS 273 SAR86 cluster bact...
EFH11299  189 QANMKPLREGGfar-lgLNTVMDENFsvp-lsdAAPLIQRLRRSrpdLVLLGTTatsdSRLLLQTLTEFglgqgkVPVIA 266 Roseomonas cervica...
Feature 1      #                                                                              
BAA81537  268 AQDAGfinps---yvsqvGKDGWYIFSREVfspdlidkiprLKEVNDRYKKKygvd-lngNSARDYTGIWVLYyaledac 343 Aeropyrum pernix K1
OIO99089  271 GMGASgytdpe--siqalGETAEYYANTFSynpak--ktpqNEKFVADFKAKtghi-pteAAGMNYYAAWVLKealelsg 345 Anaerolineae bacte...
OLB78368  278 GNGAQyitpey--lqamgATQVEGLMTTQGtait---kdpyAADFLKRFRERtktpwtvhDTTSVYSESWIIKealekaa 352 Alphaproteobacteri...
OLC58223  264 GVGAWlvtpe---yvkavGPELLDSIKAVVaahp----lkgQEELVKRFKERtgepfmtqDPLMSYAHVWIIKeaaerak 336 Candidatus Rokubac...
KQZ13370  270 SSGAHigapel--lknigPDLLEGVMSVVGnwg-----akgQEEIIQRFKTEtgepwmtqDSISAYGDMWLFKqaledag 342 Mesorhizobium sp. ...
OFW51835  267 GMGACgftdpe--siealGETSEYYSNTYSynpak--ntpqNRKFVEEYTAKvghi-pteAAGMNYYAMWILKealelsg 341 Actinobacteria bac...
OZI45182  268 IAIAEpevl-----ntvsPALLNGVMSAVGnwgak-gqealIQRMKTEYKEPwm----tqNAISTYGDMWIMKaalerag 337 Bordetella sp. AU9919
OJW27258  271 KVGGGghwavpellnvagAENLEGVLVGLAnwp-----gknLADLEKRFVARtkepwfghDSIFAYVHVLILKealercg 345 Rhodospirillales b...
PCJ39771  274 NGAAMgdpdl---lsnmpGFLLEGVMSIVAnws-----trgQEELIDKFKDVsgepwmtqHPLSTYGHVWLFKqaleqss 345 SAR86 cluster bact...
EFH11299  267 PSANWgtpem---lrnmgATYLEGVIGVAGnwt-----skqQAALNQTLLQRagepwliqDTLSNYGHVLLVAdalerag 338 Roseomonas cervica...
Feature 1                                                           
BAA81537  344 kkaspsnpeefrralrdslvnlqlspdqiiMPWKGVKFDEkGQNIlGQGLIVQM 397 Aeropyrum pernix K1
OIO99089  346 qmfptdplnpdnlrqaflkldltsgpavetYPGDHIAFTPtGDNPdAKAVVLQV 399 Anaerolineae bacterium CG2_30_64_16
OLB78368  353 stdpkkvr-------daisslhittppptaFNGSEIKFDVnGQNTlAPPFIVQW 399 Alphaproteobacteria bacterium 13_2_20CM_2_64_7
OLC58223  337 stdpkaird------avaklditsgpaataLAPGRIRYDEhGRRIgAIPIIVQW 384 Candidatus Rokubacteria bacterium 13_1_40CM_...
KQZ13370  343 kadkkavg-------ealrkmdttegpakyYPGGHIKFDEaGHNVnAKLIIVQW 389 Mesorhizobium sp. Root1471
OFW51835  342 klfpgdslnpdnlrkafleldltsgpavetFPVNHIAFDGkGDNPyARATIMQV 395 Actinobacteria bacterium RBG_13_35_12
OZI45182  338 kadreav---------gqamhtldegpsryFPGGEIKFDEaGHRVgATLTVIQW 382 Bordetella sp. AU9919
OJW27258  346 vadrrkva-------qairemdltdgpaqfFPDGRIKYDEkGRRVgAKLCVVQW 392 Rhodospirillales bacterium 69-11
PCJ39771  346 srdstvia-------ntlrnmtlsdgavnyFPGNSLSFDQtGKRIdAGILVIQW 392 SAR86 cluster bacterium
EFH11299  339 radrdalm-------qallatdttegpaklFLGERLRFEPnGRRAnPVPAVYQW 385 Roseomonas cervicalis ATCC 49957

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