Conserved Protein Domain Family
PBP1_ABC_ligand_binding-like

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cd06343: PBP1_ABC_ligand_binding-like 
type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions
This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (ATPase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however its ligand specificity has not been determined experimentally.
Statistics
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PSSM-Id: 380566
Aligned: 179 rows
Threshold Bit Score: 242.089
Created: 2-Aug-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative ligand
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to the periplasmic Leu/Ile/Val-binding protein with bound valine

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
NP_767619  91 GASDTEIKIGNVEAYSGPas-aYGVIGKTEEAYFKmin-dqGGINGRKINWISYDDgys--------ppKTVEQVRKLIE 160 Bradyrhizobium jap...
KGA08932   35 GVTATEIKLGITSPKTGTvalsYGKLPRAMKAYFDyin-dnGGVYGRKIKLISRDDkyl--------pqLAATQTRNLVL 105 actinobacterium ac...
OUV54296   33 GVTKSKITIGMTTPLTGPaa-pGYKDIAPAAKAYFkyvnanGGINGRKVDLKVYDDayn--------paKTKVGTNQLIN 103 Actinobacteria bac...
CNG06292   27 GVTATTVTIGSHQPLTGPaa-pGYSANSAASKAFFdyvnanGGINGRKIVYKYVDDayn--------ptQTVSVTQKLVL 97  Mycobacterium tube...
OLD73862   30 GITGTEIKIGSTQPLTGPaa-pGYSEIAPAANAYFqyvnahGGVFGRKITYEYLDDgyn--------ptTTSSVTRKLVL 100 Chloroflexi bacter...
OYV60908   45 GVTARQVTIGATVPLTGIas-sGYNQVAKAANAVFkyvdskGGVNGRKIRYVLEDDcygtpgfgctgvpNTVTQTQKLLA 123 Actinobacteria bac...
OYV89128   17 GVTAKQITIGATVPLTGIas-pGYSDVAKAANAVFqyvnkkGGVNGRKIKFILKDDcygtpgfgctgipNTATQTRALLS 95  Planctomycetia bac...
PHX69518   34 GVSSSAIKLGMTLPMTGTas-lGYNKIPGAAKAYFdylnanGGVNGRSIKLIVKDDryv--------ptEAVAKTNELIL 104 Actinobacteria bac...
ASY17973   34 GVSDTEIVLGMQLPQTGAas-pGYNKVDDAMRAYFdyvnskGGVYGRKITLVAKDDayk--------agLTVSTASALIN 104 Candidatus Plankto...
KUF08217   45 GVTDDSITIGTHTPLTGPaa-pGYSSVSAAALAYFeyvnanGGIHGRTINYIIKDDayn--------paNTQMVVRELVQ 115 Leucobacter sp. G161
Feature 1               ###                      ###                                          
NP_767619 161 SdeVFLVFNALGTptqtav--qkyhnaKKIPQLFLATGaskwn-dpqnfPWTMGFQPSYRVEARIFAKYILkek--pdaK 235 Bradyrhizobium jap...
KGA08932  106 SdkVFAIVGALGTathskayvaaqlakNNVPDLFVNTGfsgfd-dkakyPTTFLVLPSYAMEAKIIAKLIAdtptmkpmP 184 actinobacterium ac...
OUV54296  104 RdkIFAMYGALGTpthsav--vqdlnrRGIPDVFVNTGgaafd-nprryPMTFPYFPSYIVEAKAMGYYINktsalkskR 180 Actinobacteria bac...
CNG06292   98 QdkVFAIFNGLGTpthskv--vdylnaQRVPDLFVASGcgcwd-epqkhPQTFGWQVDYIREGKILGDHIKktf--agkK 172 Mycobacterium tube...
OLD73862  101 QdkVFAVFNALGTpthlav--vdylnsEKVPDLFVASGcncwn-dpsthPYTFGWQPDYTIEGKILGQYIQqsl--agkK 175 Chloroflexi bacter...
OYV60908  124 Lp-VFATVGSLGTptqdlv--rtllkkNGVPQLFVNSGssdwn-dpsqyPGLFGWQPSYPVESKILAKYILsty--anqN 197 Actinobacteria bac...
OYV89128   96 Ag-IFATVGSLGTptqdsv--rtllnaNHVPQLFVNSGsldwn-nptkyPGLFGWQTSYNVEAKIFAKYILaty--ptaN 169 Planctomycetia bac...
PHX69518  105 KdkVMALLAPLGTannravasavnpakRGVPVLFLNTGfsgfa-dlkkyPTHYMVLPSYIMEAKIMGKYIAenf--agkK 181 Actinobacteria bac...
ASY17973  105 KdkVFAMVGSIGTqthisv--ikdinrRGIPDLFVLSGysgfytdpkkyPTTFGSLGTYVVEAKILGKYIKenl--stkS 180 Candidatus Plankto...
KUF08217  116 DdnVFAVFNGIGTaahtsv--leylneNQVPDLFIATGsknwn-qpekfPYTFPFNADYSVEGAALAQYAVdey--pgqK 190 Leucobacter sp. G161
Feature 1              #                                                            #         
NP_767619 236 VAIFYANDDFGKDYVAGIKDVFgdkasKLIVAEESYetw--------epsIDSHIVKLKGTgadVFVNISTpkfAAQAIK 307 Bradyrhizobium jap...
KGA08932  185 SFLIAQDDEFGKDGVKGFALAG-----HKFTSTPTLypqgsltaalaeslLSGVNAAVPAAakpVMVLMGTtdsTALILK 259 actinobacterium ac...
OUV54296  181 ACLMYQDGEFGANAKTGFKAAG-----INFAEETSYysgq------qlagFQSQVTTLARAqceLVVFFGVtsaTAVLLG 249 Actinobacteria bac...
CNG06292  173 VAYFYQNDDFGQDGVKGLDKYIp---kADVVSRQSYqpg--------stdIGAQAQAIAQSkadVVVLFSIptyTALFRL 241 Mycobacterium tube...
OLD73862  176 VGYFYQNDEFGLDGVKGLDQQL-----SSVATRQNYvpt--------ntnVAPQISALQASgaqVVVSFSIpafTALALL 242 Chloroflexi bacter...
OYV60908  198 VCFLGQGDDFGTNGLAGLVAGGvspvvTDFYSTTSLvatn-------gasIAPYIQAFQNAkctVVYLDTIpgaTDAALG 270 Actinobacteria bac...
OYV89128  170 VCYLGQGDDFGADGLAGLVAGGvtpsdTQLYSVGALvvtn-------gasIAPYVARFQSDkctVVVLDTIpgaTDATLG 242 Planctomycetia bac...
PHX69518  182 IGLLYQDDDFGTDALAGFKTAG-----VNFTVKVAYasgsq-----gaaaAAGWITKFKAAeadVVILFGVssaTSAMLG 251 Actinobacteria bac...
ASY17973  181 VGILYQTDDFGRNTVEGLATAGvt--fTAKKNAATFiaga------qaggLDAQMQQLKDNnveVVVVGATasaFAAAVG 252 Candidatus Plankto...
KUF08217  191 VCVLGQDDDLGGFILEGVEEALga-dgITLAEEYSTsn----------pdITAQIGAMQAAgceVNVLGSIpafTALALS 259 Leucobacter sp. G161
Feature 1                      #                                                              
NP_767619 308 KIAELEWk--PMHLMTDVsvsiga------------vmkpagLEASEGVLSAGYlkdasdp-------qwkddegMKKFM 366 Bradyrhizobium jap...
KGA08932  260 AAEKLSLtsrFTWIAGSVggdantl-----------lalgvkPATIEGAYAASFfpdakd----------stdayVSQFM 318 actinobacterium ac...
OUV54296  250 TAAKAGFk--PTWMVTSVgsdpdii-----------galagsKALLNDVYVPSWiepiqn----------tknayVKQMK 306 Actinobacteria bac...
CNG06292  242 AALKLNYk--PTFVVSNVgsdpitltgllesfakkggaevkgSPLIQGMITDGYlaapgd----------esnswTQLFK 309 Mycobacterium tube...
OLD73862  243 TAAKLNYh--PIWVVSNVgsdvptltgl----ltkfssgaagGQLLTGMVTDAYlplvtd----------asnpwITLFK 306 Chloroflexi bacter...
OYV60908  271 AALQLSYt--PHWVISSVgsdpqtva---------apfkslgVDPEVGAISFTYlptptsaspwikwmykviqadPTDFP 339 Actinobacteria bac...
OYV89128  243 AALKLGYt--PHWIISSVgadpvtvd--------gpfskypiPDPEIGAVSFSYlpastatnawntwdrkvlladKTDFP 312 Planctomycetia bac...
PHX69518  252 VAAQLKYa--PQWMLGSVggdattik--------ltgvpagvLYNAVGFSSVPAttdm-------------kdeyIKLFS 308 Actinobacteria bac...
ASY17973  253 SANKIGYk--PQYIVISVgsdattfqtil---stkgipaavsAGLLAGTISASHapspge----------addefVKAFK 317 Candidatus Plankto...
KUF08217  260 TSARIGWd--TKWFATSVgldhttlm--------dilgedagPALIEGLVGVNYlptay-----------gdsewVELFR 318 Leucobacter sp. G161
Feature 1                                                                                     
NP_767619 367 AFIDKYmpgan---isdaNLVYGYAAAQTMVqvLKQAGDNLTRENVMkqaaslkdfapdtlipgiKINTSPTdFAPIE-- 441 Bradyrhizobium jap...
KGA08932  319 KINEKYnkgd----sfdnVVLQGMNSAMLTVqsLRAAGKNLTRTGLIkaieskga--efasaglvPLNYSATsRVGYN-- 390 actinobacterium ac...
OUV54296  307 VIADRAklp------wnfYTYYGINTAYVLAqaLESAGPNLTREGFVealeenas--sfrsaavvPMRFSKSsHQGLT-- 376 Actinobacteria bac...
CNG06292  310 KVHAQYipnl----pfngNIVYGMSVAYTFVqaLQAAGKNPTRKGLVealeksh----ftgpgvvPFAYSKEsHAGYT-- 379 Mycobacterium tube...
OLD73862  307 KIHDQYiqsl----pwdgNVLYGMAAAYTFVqaIKAAGRNPTRAGIVhtlettkl---tggpglaPYGYGSSnHLGYLgv 379 Chloroflexi bacter...
OYV60908  340 GFTSTSpl--------ngNIEYGIGFGVAFVeaLKAAGKNFTRASFLkllthstf---tqtpslaPLQYTPVnHQGLN-- 406 Actinobacteria bac...
OYV89128  313 NFTATTpi--------tgNMTYGIGWGVAFVeaLKATGRNVTRAGFLktlthttf---kqtpaltALRYTPTnHQGLS-- 379 Planctomycetia bac...
PHX69518  309 DIYAKAvpgs----afdlNVLLGMNTAFMTAqaLKAAGTNPTRKSLMaaidskga--tfansalvPLGYSATsHVGLT-- 380 Actinobacteria bac...
ASY17973  318 KINDEFntgpatgkawdnNVLQGMNIGYTMTaaLMGAGKDLTRPGIIkyiennpa--klssaalaPLGYSAKtHEAYT-- 393 Candidatus Plankto...
KUF08217  319 EINDTYnssa----pfteNVVFGMSVAYLFTeaLEKTGENPTREGILdvirsge----lkgngiaPLAFGPKsHGSYY-- 388 Leucobacter sp. G161
Feature 1                 
NP_767619 442 QLKMWRFKNGQW 453 Bradyrhizobium japonicum USDA 110
KGA08932  391 GYWFGQLNAKGE 402 actinobacterium acIB-AMD-7
OUV54296  377 GFYMGQYDAAGN 388 Actinobacteria bacterium TMED115
CNG06292  380 GAVIGTIKGENV 391 Mycobacterium tuberculosis
OLD73862  380 QVATIGADGKAT 391 Chloroflexi bacterium 13_1_20CM_66_33
OYV60908  407 AGQIDEVASATS 418 Actinobacteria bacterium 21-73-9
OYV89128  380 GGYLVTVTSASA 391 Planctomycetia bacterium 21-64-5
PHX69518  381 GYWVGKYSPTGD 392 Actinobacteria bacterium
ASY17973  394 GFWIGKYDATAV 405 Candidatus Planktophila sp. MMS-IA-79
KUF08217  389 TVGILEVEDGQQ 400 Leucobacter sp. G161

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