4GNR,3TD9


Conserved Protein Domain Family
PBP1_ABC_LivK_ligand_binding-like

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cd06347: PBP1_ABC_LivK_ligand_binding-like 
Click on image for an interactive view with Cn3D
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids, peptides, or inorganic ions
This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in uptake of amino acids, peptides, or inorganic ions. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Statistics
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PSSM-Id: 380570
Aligned: 170 rows
Threshold Bit Score: 250.537
Created: 21-Mar-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand binding
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:4GNR; Streptococcus pneumoniae branched-chain amino acid transporter substrate binding protein LivJ binds isoleucine, contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                   #                                                                 
4GNR_A      9 KIGFNFEESgslaaYGTAEQKGAQLAVDEINAaggi---------dgkqIEVVDKDNksetAEAASVTTNLVTQsKVSAV 79  Streptococcus pneu...
ALJ56775   44 RIGVFQSLTgaeasFGQEVMKGIEMAMKEINAqggvlvkwnkknslrcpLEIIVRDNqskpGETSAIARELISRyRVVAL 123 Candidatus Xiphine...
KKM11424   45 KMGVLAPLTgniatFGQEQKNAVEMRVKEINDaggi---------lgykIKLFVEDDenkpEMAATVTQKLINE-GVSVI 114 Clostridiales bact...
OJX38296   53 LIGNLQDESggmkaLSSALTYAATMKIEEVNAaggi---------ngrtLKLVTYDTrsdvNEAINALRRMVEQdKVPVV 123 Chloroflexi bacter...
OGP76906   29 KIGIYADLSagtaqWGTDAVKGAKLIIKEINAsggv---------lgkkIEPVIYDSkvspTEGVKAYTRLVNEdRVPAV 99  Deltaproteobacteri...
SFO11023   66 KIGALQDITgktatLGKMIQAGAQYAIDEINAaggv---------ngkkLELITRDTtgdvTEAINAFTLLATQdGVSAI 136 Clostridium aminov...
EEG57078   55 VIGSVNDLSgnrsvNGNAINNGVKLAVEEINAaggv---------lgrqIKLVTYDNkndsQESINGYTRLADLdKASAV 125 [Clostridium] aspa...
EDS10841   57 LIGTIQDLSggaseAGTANAWGVEYAVRVINEqggi---------ngrpLEVIAMDCkndvQEGVNCYRLLVDEkNVAAI 127 Anaerotruncus coli...
AEC02782   36 VIGSVQDITgptssLGKMVDSGARLAIDEVNAkggv---------ngktIRIITYDTkgdvNEAINAFTRAVTTdKVSAL 106 Sphaerochaeta cocc...
ADY14007   35 KIGSIQDLSggastAGQPNAWGAEYAVKVINEkggi---------ngrmLEITTMDCkndaAEGVMAYRKLVDEvGVAAI 105 Sphaerochaeta glob...
Feature 1        ###                    ###                                                   
4GNR_A     80 VGPATSGATAAAVANAtkAGVPLISPSATQDGLTkgq------------dyLFIGTFQDSFQGKIISNYVSeklnakKVV 147 Streptococcus pneu...
ALJ56775  124 IGEVSSGRTLEAAPIAqrYHVPLLANSASNDRVTkig------------nyVFRISYRDSQQGEVLARYIYllg-krKAA 190 Candidatus Xiphine...
KKM11424  115 IGGMSSSSTMSAAPIAqrAKVLMISPWSTNPKATsag------------nyIFRACFSDDFQGAVQARYAVeklgakRIA 182 Clostridiales bact...
OJX38296  124 LGPPIANIGIAVAPIAeeLKVPIVGLFMDDKCTIqenge--------pwtyMFLAQDSATYQGLTMAAYAIqelgvkKVA 195 Chloroflexi bacter...
OGP76906  100 YGSLLSNMGLAVSPVAekLKVPVVARCMDERVTTpdfkmedpenpgrvnpyFFLLQPSSYQQSYLIGGYAIdelkmnTFA 179 Deltaproteobacteri...
SFO11023  137 IGPPVANIGLAIAPLSeqYNVPILGFAIDTAVLQnkdgv--------tyknMFLFQPSDDQQGAIMAKYAInelnskKIG 208 Clostridium aminov...
EEG57078  126 ITSDASSICLSLVEISnqKKIPLMGMPSDPRAVMnpdtqe------vypymFLVDQPNAPQQANIMAKYIEantdlrKAA 199 [Clostridium] aspa...
EDS10841  128 VGPPLSNPALAWVDLSteDEIPIVGHFMDERCTTnentg-------epypyMFLAEPGCAQQSYSIAAYAMeklgvkTVG 200 Anaerotruncus coli...
AEC02782  107 IGPPVANIALALAPISerYSVPFLNLAIDPKVQIkadgt--------pyknMFGMQPSADQQGSIMAQYAIekrgfgKFG 178 Sphaerochaeta cocc...
ADY14007  106 IGPPLSNPAAAWVELSeeDSIPIVGHFMDEVCTTnpdtg-------kpypyMFLAEPSSAIQSYCMAEYALtklgakTAA 178 Sphaerochaeta glob...
Feature 1             #                                                     #                 
4GNR_A    148 LYTDNAsDYAKGIAKSFRESYk-----GEIVADETFvagdtdFQAALTKMKGKDFDAIVVPGYYneAGKIVNQARGMGi- 221 Streptococcus pneu...
ALJ56775  191 LLVDSSrDNSATMADSFKKQFia--lgGDIVERQSYnahdkdFQAQVTTIKNSGADCLFLPGVYteCATIMKQARSLGl- 267 Candidatus Xiphine...
KKM11424  183 QLLDVSnDGSKGQGEVFQKVAke--lgAEMVAVESFsggdkdFKAQLTKIKGQNPQLLDLPSYYaeDALIAKQARELGl- 259 Clostridiales bact...
OJX38296  196 ILYNSSnSYSVGLATPFEEAIlk--sgGEIVAKETYtgtdkdFRAQLTKIKSANPDVIYFPSYPveIPLIYTQAYELGi- 272 Chloroflexi bacter...
OGP76906  180 MLYTPSnSYSFMLAKGFEYYIkk--rgKKMVGSFDFqagdmdYKAQLTKIKALNPDGLYIPNYVpeNANAAKQARELGl- 256 Deltaproteobacteri...
SFO11023  209 AIYRSDnAYSLGLVDGFKSYLsesgsdAKIVQEVQFtatdtdFSTMLMKLMNAGADVIYAPNYTqeLITIAQQARAVGyt 288 Clostridium aminov...
EEG57078  200 VFYDQSnAYTVTNSQAFIEIWke---iGEVVIVETCnsndqdYKTQLNKIKNSGAEFIYCPNMPsqLVMMVQQAVQSGl- 275 [Clostridium] aspa...
EDS10841  201 TFYNAGlSYAVMHAEPFADYItk--ngGQVLAEESFqtgdvdYRAQAVKLAQANPDAVFICNYAadNALCYDYLREAGy- 277 Anaerotruncus coli...
AEC02782  179 IIYNESnAYAVSLLAPFVDTVka--ngKTVAVTTSYtandkdFKTLLNNILQAGVDAIYSPGYTqeLILITQQARAMGfk 256 Sphaerochaeta cocc...
ADY14007  179 TLYNPGnAFAKSQAAPFVQYMna--ngGKVVSEQTFswtdkdYSAQAIKIVAAKPDVVFLCDYLpqNVTSYDALRDAGf- 255 Sphaerochaeta glob...
Feature 1            ##                                                     #                 
4GNR_A    222 dKPIVGGDGFngeefvqqatAEKASNIYFISGFsttvevsakaKAFLDAYRAKyn--eePSTFAALAYDSVHLVAnaakg 299 Streptococcus pneu...
ALJ56775  268 nLSTFGGDSWdspvf-vnvaGKAAEGAVFTNSFsaddp-dptvQSFVQSYRSKygqhakPMALAVTGFDALKLMVnaier 345 Candidatus Xiphine...
KKM11424  260 nIPLLGGDGNdsadl-ftigGSAIEGFVITNHYssddp-rpevQEFRKKYESTyk--avPGAGAALSYDAVTLYKlavek 335 Clostridiales bact...
OJX38296  273 kVPMLGSNSVpptglapstdPAATTNTFYPYGInpsd---pvlVDWAAAYKAKfn--spALAQSFSGADAFGIILqaiea 347 Chloroflexi bacter...
OGP76906  257 kTTFLGNNSWfepm--dkvaGPAADGAYFPLNIsrdd---pslKVFIDKYKAEyn--elPRLHSFSGWDDVGFIIeaikk 329 Deltaproteobacteri...
SFO11023  289 gPIIMGLDAAppfa---slaGAASNNVIYINNItese---pkvAEIMEKYKAEtg--adATNKFFLGYDVVNILAdtite 360 Clostridium aminov...
EEG57078  276 dIPYMGAMDMadpflsllndPQSLSLAYFQMVCwmqd---ekiQPFFESYKAKyg--edPIVKSVNGYDAMYILKaaiek 350 [Clostridium] aspa...
EDS10841  278 qGIVLGNNTFqapf--ntlvKTKVYDTYFLQNVdmenp-ddpsYAIVQKYMEEtga-qyPIANACFGYDATMVLAealka 353 Anaerotruncus coli...
AEC02782  257 gALIYGLDAGppfn---nllGESADNIYFINNIdtte---phlEAITKSVKATqn--idVTNKFFLGYDIGNILVqalga 328 Sphaerochaeta cocc...
ADY14007  256 kGAIIGANTLslpf--atmvKNKVNDVYFLQNYdmlnsnvgniNELVTKHMKEtgt-aaPAANVGFGWDAVQVLAqamrm 332 Sphaerochaeta glob...
Feature 1                                                                 
4GNR_A    300 ----------------aknsGEIKDNLAXTKDFEGVT--GQTSFDAd-HNTVk-TAYMMT 339 Streptococcus pneumoniae str. Canada M...
ALJ56775  346 akvdgpdvnlkdpgrlkrfrHAIRDALAKTCNYGAVS--GSITFDKn-GDPAk-AMVLLR 401 Candidatus Xiphinematobacter sp. Idaho...
KKM11424  336 a--------------gvvenEKVRDALEGLKDVNLITa-PKFSFDAn-RNGVk-GAAILE 378 Clostridiales bacterium PH28_bin88
OJX38296  348 c-------------gdditsVCITEKLNTMESYKGFQ--GTVKLSPdtHQPIglPLAIMT 392 Chloroflexi bacterium 44-23
OGP76906  330 a--------------ksadpQKVRDAMAATTKYEGVI--GTINIDPktHRPVglKMSVLK 373 Deltaproteobacteria bacterium RBG_16_4...
SFO11023  361 ---------------vgedsVAIRDAVEKLTGYEGLT--GIISINPenHQPQglEMYIHE 403 Clostridium aminovalericum
EEG57078  351 a--------------gsddpEAIRNALENDISGLDLLvsDNYSQDPktHSPLnlGMVMCK 396 [Clostridium] asparagiforme DSM 15981
EDS10841  354 v-------------ddpydgPAVAAALAEVKDAPGAA--GPITINPrtHRTLgmPMLIAE 398 Anaerotruncus colihominis DSM 17241
AEC02782  329 ---------------vgsdsVAIRDYVENLKGYQGLT--GVITMDAktHFPLglEMVMHT 371 Sphaerochaeta coccoides DSM 17374
ADY14007  333 a-------------kdptdgKEVADLLRKTDNVMLSSg-STITIDPatHRPSnmGMYIAD 378 Sphaerochaeta globosa str. Buddy

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