4OBB,4NV3


Conserved Protein Domain Family
PBP1_ABC_HAAT-like

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cd06348: PBP1_ABC_HAAT-like 
Click on image for an interactive view with Cn3D
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides
This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Statistics
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PSSM-Id: 380571
Aligned: 33 rows
Threshold Bit Score: 334.971
Created: 21-Mar-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
ligand binding
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:
  • Structure:4OBB; periplasmic ligand-binding domain of uncharacterized ABC transporter from Trichormus variabilis in complex with alpha-keto-isoleucine, contacts at 4A
    View structure with Cn3D
  • Structure:4NV3; periplasmic ligand-binding domain of uncharacterized ABC transporter from Trichormus variabilis in complex with valine, contacts at 4A
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                               ###   
4OBB_A     35 PIGIALAQTsnvalLGQEQVAGAKIAEkyfndkggvnGTPIKLIFQDTagdeAGTINAFQTLINKdKVVGIVGPTLSQQA 114 Anabaena variabili...
SDT46303   38 KIGVLMPLSgkgasYGQHQEIAMKMALeelqk-tgikGEKVEAVVYDTrgenAEAITLTRKLIFNdKVLAIIGPFFSAEC 116 Bradyrhizobium can...
OGP48896   37 RIGVAVCISghganVGKREAIGAQAAVdvinakggvnGVLLKLFIEDTasnpQEAVNVVRKLTADhKILAIVGPHYSSEA 116 Deltaproteobacteri...
OGA32970   28 RIAVVQDLTgptsvIGIGEKNAAVLAAeqlnnsglleNAKIELIVEDSrgtkEGAVNAFQKVISRdKVVAIFGPTLTVQG 107 Betaproteobacteria...
OGQ01523   41 KIGFLATKTgfgasWFEWGMPGLEVAQeeikslggvnGVPVEFIVYDTatkpQEAIQMMQKLTYTdKVLAVIGPHTSSEC 120 Deltaproteobacteri...
OGL12327   26 RLGGIYPITgkgaeWGEHSKIATDIALeeinaaggvgGVKLEVVVHDTatevGQAISLTRKLVLEeKVLAINGPCFSSEY 105 Candidatus Rokubac...
KUO70996   46 KIGVLTSLTgkgtdWGKKQKVALEMVEqetnasgginGSPVKFVIYDTggenQQAVILTRKLASEdKVLAILGPYFSGEC 125 Desulfosporosinus ...
ABZ83682   54 KIGVLVDKTgkgadWGKKSEIAARIAVdeingagginGAKIELIVKDTggknEEAVNLTRILADE-GVAAIVGPFFSGEC 132 Heliobacterium mod...
OGP87884   35 KIGVQLATSgptasYGKMITVAAKMAEeeinkaggigGIPLQLIFADNradpGEAVLITRKFIAQdRVLALGGIFNSGPF 114 Deltaproteobacteri...
OLD38734   37 RLGVIMPQAglfvdWGQHGLIGAEFARdeinaaggigGLPLELVVVDDrgdpKESVTLTRRLAQTdRVLMIHGSISSSSA 116 Candidatus Rokubac...
Feature 1                      ###                                                  #         
4OBB_A    115 FSANPIAERAKVPVVGPSNTAKGIPei-gDYVARVSAPVSVVAPNSVKAALkqnpnikKVAVFFAQNd-aFSKSETEIFQ 192 Anabaena variabili...
SDT46303  117 EVAFPIAVQGKIPIITASSAKPGIAgknrPWAFRNALSSDQMNGFLLDTWLkrn-pvkSVVILTDVKdafTKVDGTVVFP 195 Bradyrhizobium can...
OGP48896  117 EATFPLGNRLKIVQICVASSKPGLSaanrPYAFRNTLTEDKIADAVVKKFKqry-nikKAAIMTDIKdavSKSVGTQVLP 195 Deltaproteobacteri...
OGA32970  108 FPAHPIAQKAGVPTVSASNVGKGITai-gEYIFVTSTPEYKLMIPNLVDTVypklqakRVAAIQAKDq-dWCIDAVAAYA 185 Betaproteobacteria...
OGQ01523  121 EVVFPIAVRAKISCVGLLSAEPGISakyrPWAFRNTLTSDKVYGPLVRKWAtkn-qvkTAAIIYDQKsafTKADGEKVFP 199 Deltaproteobacteri...
OGL12327  106 EALAPLLDRLQIVIVSQCSSKPGLAkl-sKWAFRNTLTSDKQLEPAVDVWKkry-kikTAAILYDSAdavSAAEGAKILP 183 Candidatus Rokubac...
KUO70996  126 EVAFPQGNELKIPIISATSAKPGISaanrPWAFRNTMTDDKMIKVGLPIFLkky-pvqNTALVADLKdavSTSFANGTLP 204 Desulfosporosinus ...
ABZ83682  133 EVAFPQANKLNVPIISPSSAKAGVSeknrPWAFRNSMTDDKLLRDATPLFVkay-nvkTVAVIYDEKdalSKALGTTDLP 211 Heliobacterium mod...
OGP87884  115 EPIAAQAAEHKTPVISCGSVKPGITqigkGWAFRNTSTDDKNVVPTVEFFKkkn-nikTAALVYDSKgawAKNVGEVIFP 193 Deltaproteobacteri...
OLD38734  117 GVMFPLSASLKVPIITPTAAAPGLTdkfrPWAYTMNPGAARALGTGLAALRkhhpnvkKATILYNSAdaiSKAEGEGVMP 196 Candidatus Rokubac...
Feature 1                                                                             ##      
4OBB_A    193 QTVkd----qgLELVTVQKFqttdtdFQSQATNAINLkPDLVIISGLaadGGNLVRQLRELGYq--GAIIGGNGlntsnv 266 Anabaena variabili...
SDT46303  196 AEFke----kgVNVLDNISYqtgdidYSAQVTKAKGLnPEGILIAGLyneGGNIVREIRKQGMa--QPIVGALGmsetrf 269 Bradyrhizobium can...
OGP48896  196 QAFkang-ieiITGNDPITFqtndtqFTAQITKLKVFnPDGVGLGALgpdALNIITEARRQGMs--QPFMGTAPlmegev 272 Deltaproteobacteri...
OGA32970  186 KAFks----kgVELLGVETFitgetnYLAQLNKIKELkPDAIIVAALfqdSGLIMSQAREIGIpasVPFLGTVGmnnpkt 261 Betaproteobacteria...
OGQ01523  200 AALes----agVKFLGSVTYltgdtdFSAQITKIKMWnPDGLVLATFgkeGGLIVKECKRQGLs--VALVGSIDcnaidf 273 Deltaproteobacteri...
OGL12327  184 VLLkk----ygVEQKDILTYqtkdidFSAQLTKIKSLgVDGIALGSCyqqAANIVRQARKLGLk--QPFLAGACtgspef 257 Candidatus Rokubac...
KUO70996  205 SAMkgisglsiLNDGKSITYntgdtdFSAQVTTLKQLgPQALGIGGLyqeIASLAQEMKRQGLs--IPALGNVGmysddl 282 Desulfosporosinus ...
ABZ83682  212 REFkaag-vniVNEGNYLTYktgetnFAAIVTQIKAMnPDAIAFGGLyneAASFAKEMERQGLk--KPVLGGNSmysaal 288 Heliobacterium mod...
OGP87884  194 MACkkad-itiVNADKPITYewgdidFSAQVTRLQGLkFDGVLIGGIapeGAHILKEMRRRGLn--QPACGALGwfspdf 270 Deltaproteobacteri...
OLD38734  197 PTFkq----anIELLDSITFqtgdldFSAQVTRALAKqPDLLFLGSGsreAALIAKEARKQGFk--GPIHGGVAtatpdl 270 Candidatus Rokubac...
Feature 1                                                        #                            
4OBB_A    267 favcKALCDGVLIAQAYspeytgeinKAFRQAYVDQyk--------kePPQFSAQAFAAVQVYVESLKaldtknkvskiq 338 Anabaena variabili...
SDT46303  270 ldisGKAGDGTTVVNPFwpddpdpkvHAWATEYQNRak--------vaPGNTAALMYDTIFLAKNCIEksgvt-----nk 336 Bradyrhizobium can...
OGP48896  273 pqkgGKAVEGTFSGTVWdrsddsaksKQFVTAYAKAqqalypgeftkiPDYYAANAYDAVFMIVEAMQkkgat-----nk 347 Deltaproteobacteri...
OGA32970  262 velaGKAAEGALFGTTWhpsapgtvsQKFVADFRAKfs--------aaPDHFSAQAYDAMLMLGHAIR------------ 321 Betaproteobacteria...
OGQ01523  274 vrlaGSAADGVWTSHSFwpdnpdpkvQRFMKRAKEIsgg-------keADLTTARYYDCAMINYHLIKkmgvtn---rpe 343 Deltaproteobacteri...
OGL12327  258 aklvGDDGEGSIIGSAGwpddprprnREFLKKFMERagg-------kkPNYGGMRSYDNVYIMKQVIEkygvtn---kpg 327 Candidatus Rokubac...
KUO70996  283 ikqgGDAVEGWVTLSNFwptnpdlkvQNFNKQFSIValkng--lkdssPDAFSVSMYDTAKITLEVIEknkitp---atp 357 Desulfosporosinus ...
ABZ83682  289 iqqgGKAVEDFVATSCFnvyadnprvKSFVDKFKPEaakit--paddlPGTVEAQFYETFYMISDILKkankng---ntp 363 Heliobacterium mod...
OGP87884  271 akvgGKAVEGAVFGVGFwpdnpdpktQRFVKEFAERtng-------aeANYRDVGMYDSLFIFKHVIEkygitn---dpg 340 Deltaproteobacteri...
OLD38734  271 ialgGDAVESWYTTTYAwnerpiprvQTFVKKFLERsgg-------krPNSSGLAMYDQLFISKMCVEtsgvt-----nk 338 Candidatus Rokubac...
Feature 1                                                        
4OBB_A    339 lpELRTELNKQllt-------gkYNTPLGEISFTPiGEVVqKDFYVAQIKX 382 Anabaena variabilis ATCC 29413
SDT46303  337 peDLAADRERIrdcla---hvkdLSGITGPMSFDAdGDAQlKPTVLVAKDG 384 Bradyrhizobium canariense
OGP48896  348 paDLEADRTKImeyf----ttlrDFKGVCSRGFDPvGDGIkDVQVYEIKGG 394 Deltaproteobacteria bacterium RBG_13_51_10
OGA32970  322 --NANTTTDRKairdamanlkgvPGVLGEPIRFDGeRHLVaKPFVLKIHNG 370 Betaproteobacteria bacterium RIFCSPLOWO2_12_FUL...
OGQ01523  344 dlDLDREKIRKgwet-----ledFPGVEGKITINKdGDGEkSAYIFVIKGG 389 Deltaproteobacteria bacterium RBG_19FT_COMBO_46_12
OGL12327  328 dlELDREKIRKgwae-----lkgFDGITGATGMDAdGEGAgKSTVLEVKGG 373 Candidatus Rokubacteria bacterium RIFCSPLOWO2_0...
KUO70996  358 leQARTEIKDGwak------vkdYKGVMGNSTIDGvGDGImEVYALIVKNG 402 Desulfosporosinus sp. BRH_c37
ABZ83682  364 vtDLRNTIKDGltn------lkdFEGLTGKTSIDDkGDGIkASYPMVIKNG 408 Heliobacterium modesticaldum Ice1
OGP87884  341 dlEKDRDLIRKgike-----lkdFQGAGGKIAFDEnGDGIkDTYVLVIKNG 386 Deltaproteobacteria bacterium RBG_16_47_11
OLD38734  339 pdDLESDRDKLakcws---glksYDGAIGAVTMNElGVNVgQIWALIVKRG 386 Candidatus Rokubacteria bacterium 13_1_40CM_2_68_8

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