3HUT


Conserved Protein Domain Family
PBP1_ABC_HAAT-like

?
cd06349: PBP1_ABC_HAAT-like 
Click on image for an interactive view with Cn3D
type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems predicted to be involved in uptake of amino acids or peptides
This subgroup includes the type 1 periplasmic ligand-binding domain of uncharacterized ABC (Atpase Binding Cassette)-type active transport systems that are predicted to be involved in the uptake of amino acids or peptides. This subgroup has high sequence similarity to members of the family of hydrophobic amino acid transporters (HAAT), such as leucine-isoleucine-valine binding protein (LIVBP); however, its ligand specificity has not been determined experimentally.
Statistics
?
PSSM-Id: 380572
Aligned: 56 rows
Threshold Bit Score: 304.492
Created: 21-Mar-2008
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
putative ligand
Conserved site includes 9 residues -Click on image for an interactive view with Cn3D
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to the periplasmic Leu/Ile/Val-binding protein with bound valine

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                    #
3HUT_A      6 LLGYELPLTGanaaYGRVFQEAARLQLDRFNAAGgv-----gGRPVDILYADSrddaDQARTIARAFVDDpRVVGVLGDF 80  Rhodospirillum rub...
SET45110   66 KIGCPQPLTGtnalVGDTTVKAAQLAVKQINEQGgl-----lGRQVELVVYDDqaspEEAVKIATKLIEVdKVDVVCGSL 140 Clostridium lavalense
SCJ42754   39 KIGYFGPLTGgsaqLGQAALNGAQLAVNQLNEKGgi-----lGCQVEIVSYDDksspEEAVKAATKLVQVdKVNAIFGSL 113 uncultured Butyric...
SEU32697   57 ILGSPQPLTGvnaqAAQATLNGIMLAVEELNAEGgl-----nGQTIKLVTYDDqgspEEAIKIANKMVEVdKVDAVIGPL 131 Desulfotomaculum g...
SET84397   52 KIGMYQVMSGanaiYGEEALNALNMVVDEINSRGgl-----nGAKVEVVVYDDqgspEEAVKAVTKLINVdKIDACISSC 126 Clostridium lavalense
OHE62158   37 KIGAYFGITGgnaaYGIEARNGVVLGIEHVNANGgf-----nGVPVELIVYDTqcspEEAVKLANKLISQdKVDSAIGSM 111 Treponema sp. GWA1...
SBO97825   37 KIANVNAQSGqlssLGQWEHKGVKLAIEEANKAGgv-----dGRQIQLDLFDSqgdpTVGTNVARKIAAE-GYIAMLGTA 110 Nonomuraea sp. ATC...
OGR23028   28 ILAGYDACTGkygdYGLDDKRGQEIAVEEINAAGgiaagplkGFQLKLEFFDDrgdpKESANVAKKIASG-KYLAALGPT 106 Desulfobacterales ...
ERK56829   46 KIGLYTPLTGtsalVGTQEQMGVDLAVKQLNEAGgv-----nGKQFSVIAYDDqfnaETAVKVVTRLTQTdNVDAIIGSM 120 Oscillibacter sp. ...
SDI34547   42 KIGLYGTITGpnalAGEMLEKGGKLAMKEINEAGgi-----nGKKLELVVYDDksspEGAVKAVTRLVDVdKVTAIAASN 116 Proteiniclasticum ...
Feature 1     ##                    ###                                               #       
3HUT_A     81 SStvsXAAGSIYGKEGXPQLSPTAAHpdyik-ispwQFRAITTPAFEGPNNAAWXIgd-gfTSVAVIGVTTDWGLSSAQA 158 Rhodospirillum rub...
SET45110  141 ISscvLASGQFFEEAKIPCIGTGLSStwmkq-gweyVFRACPNAGMGMPALAEYMKnl-giDRIAIFQGQDDSSASGAED 218 Clostridium lavalense
SCJ42754  114 HSanvQAAAPVVEESQTLLVSGGTSPtwlqq-gytyLFRSIANANTASKQLAQYANde-glKKIATFTSNDEYGTSGADA 191 uncultured Butyric...
SEU32697  132 LStcqMAQGALLNDAKIPTIGIGLSPsfmen-gwdyIVRSSLNSDYVMKILAQNMVdl-dvHSLAIFSGQDDSSKKAAGS 209 Desulfotomaculum g...
SET84397  127 VSsciLASAGALNDAKIITFGTGLSPtymnq-gwdyVFRACVNSDFVAPLTVDLAKdl-nvTNVAIFRGQDESAIATAKT 204 Clostridium lavalense
OHE62158  112 NSgevLAAAPFFNNAGIYHFGCGTAPswmaq-dwpfVFRAAMNNNNAVPIASKLVTei-gyKSIAIFHGQEDAALSTAKK 189 Treponema sp. GWA1...
SBO97825  111 ESavtLAMAPILKDAKIPNITSGQSPkladl-gspfLFLNAPTSVTFDETLAKYLVddkgmKKIALISNNGAYGSGEHDA 189 Nonomuraea sp. ATC...
OGR23028  107 MSscaLASTPIFSRYGVANIITYANAstiteqgfdnLIRLTYTTKSISDFMVLTSKdefkaKTIAIISENQDYGQQLRKY 186 Desulfobacterales ...
ERK56829  121 SSaniLATADIVEQAQVLEIGCGTSPtwtna-gyeyVFRGTQNAASFNTGIVELMTrm-gvTRLGTMVSSTEYATTGWAE 198 Oscillibacter sp. ...
SDI34547  117 SSp-nILATTQISEEAKVLQVGAGTSpsytnagfkyLFRGTANGSLPNSAAVEAMLem-gvKKVGILSVAAENGKSGVES 194 Proteiniclasticum ...
Feature 1                                                  #                       #          
3HUT_A    159 FRKAFELrGGAVVVNEEVppg-nrrFDDVIDEIEDEaPQAIYLAXAYedAAPFLRALRARgsaLPVYGSSALYsp-kFID 236 Rhodospirillum rub...
SET45110  219 MRNACKDaGIEVLTSETYveg-dtdYSGQIAKILNSnPQAVFTSTFSptQAPFAKQLRQFgyeGLVFNKETLSi--dNIK 295 Clostridium lavalense
SCJ42754  192 FKAACADyDIEFVAAETMang-drdFTGQFAKINAAsPDAVLVWCLSddMGAVTKQLRQSgfsGTILGPEGYSmp-eILN 269 uncultured Butyric...
SEU32697  210 MKTEAEAvGITVTTTETYvdg-dtdFSGQAAKLINTkPDAIYAATYAnvQPIIAKQLRQFgfeGLCFNKELFQa--dSLR 286 Desulfotomaculum g...
SET84397  205 FASTCEAnGLSVVTEEAYneg-dsdFSGQITKIMNSgADAVFMSTVGatYGVFIKQLRQYgfeGIILNKEALPs--dAVQ 281 Clostridium lavalense
OHE62158  190 FQEELEKiGVKIVAKESYdvg-dtdYSAQIQKMLAAkPDGILISVIGetGGPLVKQIRQAgydGIIFNKESFMds-qIDV 267 Treponema sp. GWA1...
SBO97825  190 FLNSLKTrNITPSADEVVtpd-qkdFNANLAKIREQdPEVLFIGAEEvqSGLIAKQARELgikAVFAGGAPVGtdvyATT 268 Nonomuraea sp. ATC...
OGR23028  187 AIDKAKEtGLTISTDDVItpgqdvdFSSVLLRAKNQnPDVLLLFVTYneGGMIAKQVRKMgwdIILYGPDALTap-kFFE 265 Desulfobacterales ...
ERK56829  199 VKEQLADtDIEIVLETDYmag-dtdFTGQITRLLNAdLDGILLYGATedYGIECKQLRQLgyeGYIYGSETFAat-dVRE 276 Oscillibacter sp. ...
SDI34547  195 FKSLWGD-QIEVVAEEIYqtt-dtdYTGQIAKILSAnPDGILIYGMTneSALAIKQFRRNgyeGYIYGPEALGvp-dLLS 271 Proteiniclasticum ...
Feature 1                                                                                     
3HUT_A    237 LGGPAVEGVRLATAFvlg-----asdPVVVEFVSAYETLygai-ptlFAAHGYDAVGIXLAAVGRAGpev--treSLRDA 308 Rhodospirillum rub...
SET45110  296 VAGDAGNGYCFMFPYvtynsvdeiqdPMMKEFSQAYFDEygampyhdCAYRAYDSMMVLKKAIEIAGdtd---geAVKNA 372 Clostridium lavalense
SCJ42754  270 VAGDTANGVCFAAQYliyedpeeaqdENMRVFLEDYIAEfgaapasdNACRAYDGINMIAVAMEDSGadh---gqELRDA 346 uncultured Butyric...
SEU32697  287 VAGSAANGWIFAYPYisyktvdecdiPNMKEFIVKYDEKygalpyheGAMRGYDAVKVLAEGIKNAGs-------TDPDA 359 Desulfotomaculum g...
SET84397  282 VAGEAADYVAFSAPYltyasveecddPNIKEFLTKYQEKfgtipatdCAYRVYDSLIVLREAAEKAGt-------NEHEA 354 Clostridium lavalense
OHE62158  268 AGAEASNYIAFANPYvtyktpedcdiPYMADYLKRYKAKygnmvktdSAYRGWDTVMAMWEASKLAKs-------NDSKA 340 Treponema sp. GWA1...
SBO97825  269 AGLKNAEGTIVSSPYlsn-----eatPEIKAFAEKYKAAyned-armHVAKAYDGASILIEALKQTDgeg---gqKLADA 339 Nonomuraea sp. ATC...
OGR23028  266 LAGDMDKIYLSSLLSldv------tqPAAKTLVSEFEKKhtgl-pplSAIYGYDAVKVAAKVIENGGvdrasfikNLKDV 338 Desulfobacterales ...
ERK56829  277 VASDAANGVLFACGYvipdaiedaatEEEKAFLEAFVEEygempvsdTAYRGYDSMMLLAKVFETAEsme---gpDLREA 353 Oscillibacter sp. ...
SDI34547  272 VAGEASDNVIFGSGAvipatvedasnPVEKAMLEAFVKEygalpvsdVVYRGYDSVKLIAEALKNAKdit--dpeSIRES 349 Proteiniclasticum ...
Feature 1                                                
3HUT_A    309 LAAtdry----agvtGITRFDPetRETTk--ILTRLVVREGDF 345 Rhodospirillum rubrum ATCC 11170
SET45110  373 ILTikdf----etlgGIQDFTKgdGEGMsleNFKPWIVWGGLQ 411 Clostridium lavalense
SCJ42754  347 YNDidgy----vglaGTFSYKGgnGEGId--VMRIFRIEDGKY 383 uncultured Butyricicoccus sp.
SEU32697  360 IMAgiksisgleglgGTFDYSSgdGEGLh--SCNSYVIADEKY 400 Desulfotomaculum guttoideum
SET84397  355 VKNavnqisglqglgGVLDYTDgsGEGLh-nFKEFIRVDGKNV 396 Clostridium lavalense
OHE62158  341 LAAathkvi-aaglgGTMDFTKgnREAYn-tFNAFILVNGKNV 381 Treponema sp. GWA1_62_8
SBO97825  340 IRGvkra-----gllGTYNYDAn-GVGIh--ETKIGLVKDGKV 374 Nonomuraea sp. ATCC 39727
OGR23028  339 KAPgv--------gsPMYQFDK--SGEG---LVPPLVVKSAQW 368 Desulfobacterales bacterium RIFOXYA12_FULL_46_15
ERK56829  354 LLNvdyt-----gigGKFDYSDgsGDGLe-gCNLYAIVDGKNV 390 Oscillibacter sp. KLE 1728
SDI34547  350 FLAikdf----pligGNYDFTDgsGDGLt-sARSYIIQGGKHV 387 Proteiniclasticum ruminis

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap