Conserved Protein Domain Family
PBP1_Nba_like

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cd06359: PBP1_Nba_like 
Type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway
This group includes the type I periplasmic binding component of active transport systems that are predicted to be involved in 2-nitrobenzoic acid degradation pathway; their substrate specificities are not well characterized.
Statistics
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PSSM-Id: 107354
View PSSM: cd06359
Aligned: 27 rows
Threshold Bit Score: 375.45
Threshold Setting Gi: 145593317
Created: 30-Jan-2008
Updated: 17-Jan-2013
Structure
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Aligned Rows:
 
putative ligand
Feature 1:putative ligand binding site [chemical binding site]
Evidence:
  • Comment:based on sequence similarity to the Pseudomonas aeruginosa AmiC complexed with butyramide

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Feature 1                                                                                ###     
gi 28971615   24 KVGFISTLSGpiagFGLEIRDGFNLALknsgnkiGGLPVEVVEGDDqasPDVGKQLADKMIKrdKVDFLTGIVYSNVmla 103
gi 46201655   34 VVAVIATLSGpgamAGQDSVDGFTTAMrhlggrfANQEVRVVVQDDkgsPDTALAVARRMIEreKVDFVVTAVSLPSmsa 113
gi 146279299  27 KVGVVMTLSGsaavLGEQGRDGFLLALeelggriGGLEAEVVVVDDelkPDVAVNRARELVEshKVDVVIGAMYSNVqma 106
gi 158424815  68 KIGLVSTLSGpsaaLGVHMRDGFQLAVkelggklGGQPTEVIVVDDelkPDVAVTKVKALLDrdKVDVIAGVVFSNVmma 147
gi 121605358  27 KIGFTAPLSGpvaaVGQDQYDGFMLGIealgkklGGEEVTVVREDDqlkPELGNQIARKLIDrdKVDAIVGLGFSNVlma 106
gi 91786894   29 KIGFMGELSGptagVGQDQLDGFNLLLernggklGGVPVQLVKEDSqlkPDVANQAARRLIEkeNVPIITGVSFSNImma 108
gi 27376163   28 KIGFVSTFSGptavIGNDMRNSFELALdhlgrkmDGKPVEVIYEDDgqkPDVGKQKTEKLVQsdKVDFIVGYIWSNVlla 107
gi 91786886   38 TIGIMAPLSGpqaiVGQDQVDGFMLAVgqlggklGGQPATILKEDDqlkPEIGSQIVRKFIGkdKVDAIVGLSFSNVlma 117
gi 69934163   24 RIGFITTLTTpaaaIGNDMVDAVNLAIdhvggeiAGHPIQVIFEDDglqPELGRQKAEKLVRqeKVDVVSGFIWSNVlma 103
gi 84684176   12 KIGFVTTLTTpaavIGNQMENAVNLAVehlggkaGDLDIEVIFGDDgfaPETGKQATDKLVKqdDVDFVAGYIWSHVlla 91
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Feature 1                     #  ##                                             # #              
gi 28971615  104 vgppafaSKTFYISAAAGPAalagercnkyFFGLSWQNDGQSEAVGSYLNsknykKVFILAPNYtGGKENLEGFKRFFkG 183
gi 46201655  114 mvktlteSRAFVLNLDAAPAtmggaacspwFFQVATPVQAVYDAIGAHLTaekmrRVMIIGTDSpATDQAVASIRRAWqG 193
gi 146279299 107 itgplteAGVFVLSPNPGPSalagagcnpnFFAVSYQNDQPDEVVGAYVSdk-aaRVFLIAPNYqAGKDHLTGFKRTYtG 185
gi 158424815 148 vskpvleNETFIVSGNAGPSplagkgcspyFFAASYQNDQNHEVMGKYAQdkgykRVVLMTPNYqAGKDSMAGFKRYFkG 227
gi 121605358 107 slpriveSGTVAIATNAGPSplagagclanVFSMAWQNDGTAEAMGKFAQdsgykRVYLMAPNYqAGKDYVAGFKRYFkG 186
gi 91786894  109 vhkyvtdKEVFLVGSNAGPSqiagsqcspyQFITSWQGDQAAEAVGQYAKdkgykKVFVLAPNYqAGKDIVAGFKRYYkG 188
gi 27376163  108 slktavdSQTFLISANAGPSqlagelcspyVFSTSWQNDQTPQAMGLYMNqkgvkSVFLIGPNYaAGKDMLAGLKNTFkG 187
gi 91786886  118 slpriaeSGTVAIATNAGPSplagagckanVFSAAWQNDGAAEAMGKFAQdkglkKVYLMAPNYqAGKDMMTGFKRYFkG 197
gi 69934163  104 arrtvldSDTFLISTNAGPSdlagklcspdFFSLRGQNDVVPMALGQIMNergveKLYVMTPNYsAGTDMAAGVENTFeG 183
gi 84684176   92 srksvldAGKFLISANAGPSqmagklcdpnFFSTSWQNDQTPEAMGDVLNdagvkSLYIMAPNYaAGKDMVAGVERTFeG 171
                        170       180       190       200       210       220       230       240
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Feature 1                                                                       #                
gi 28971615  184 EVSSEVYVKLGQl---dFASELAQIRSTkpdAVFFFLPSgmSINFIKQYVGAgldkdIPYFSTGhsaded---vvtavGE 257
gi 46201655  194 EVIEVLRPRHGTt---rFADEAAAIRQAspdAVVNLLTGgmGTAFAREYAAAglkadIAQIGVWqgwerp---mlpamTE 267
gi 146279299 186 EVAEELYVPLDQm---dYSAELAQIAAAapdAVYAFMPGglGVNFVRQYRQAgl-eaIPFYSTFtvdev----tlpaqKK 257
gi 158424815 228 EVVEEIFVPLGQl---dFSAELAKISAAnpdALFTFMPGgmGVNLVKQFKQAgldgkVPFLSAFtvdet----tlpatQD 300
gi 121605358 187 QVADEVYTQVNQp---dYSAEIAQLQAAgpdAVFVFYPGgmGVNFVKQFSQAglmkkLPLLSAFtvdgt----tlpslRD 259
gi 91786894  189 PLADEVYTSLTQm---dFSAELSQVSAVrpdAVFAFFPGglGVAFAKQYAQAgmsknLPLLSTFiadal----slpaiGD 261
gi 27376163  188 EIKGEEYTVWPSql--dFSAELSKARASgaeSIFVFYPGaaGVQFLNQYTQAglkstMPLYTAFtvdel----slplqKE 261
gi 91786886  198 QIVDEVYTQVNQp---dYSAELAQLQSAkpdAVFVFYPGgmGVNFIKQMSQAglmakVPLYSVFtvdgtt---lpglhDA 271
gi 69934163  184 EVVGRDFTKWGEdpqldFSAELAKVGASgadALFAFYPGr-AAIFARQFEQSgladrVKLYTVYtfdqialptlqeagID 262
gi 84684176  172 EIVGRDLTKWGAdaqldFSAELAKARASgadGIFVFYPGaaAGAFIKQYDQAglaeeLPLYSVFtvdaislprlqeagFT 251
                        250       260       270       280       290       300       310       320
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Feature 1                                                                                        
gi 28971615  258 QMVGLKNAAHWAwdLKNPQNEAFVADFKKTYgr-iPTMYAFQGYDVVRLLDSAVkdvkgnls--dkealhtALMTTDFKS 334
gi 46201655  268 AGMDVLNVAPWSpdLETPLGKRLITDFELEYgr-pVTGWVAQGYDTAQMLDAALratggrag--drdavrnALRRAEFSS 344
gi 146279299 258 DAVGFYSGGDWApdLDTDKNRAFVAAFEAKYdr-vPASYAAHAYDAAYLLDAAVtavggdls--dkdalraALKAADFES 334
gi 158424815 301 AAAGLLSGAEWApnLDTPQNKAFVAAYEKEYgv-vPSLYAAQGYDAAKLIDGALkatggkvt--dktafrkALASAPFQS 377
gi 121605358 260 AAVGTISGAMWDvaLKTPGNTEFIASFNKKYgr-vPSHYAAVGYDTAKLLDIAVrkvkgntsdkvafaaavKSAGAELKS 338
gi 91786894  262 SAIGIVSGGFWApdFQNAQSKQFVEEFERKYkr-iPSNYAAQSYDAAQLLDSAIgkvkgnvt--dkkafmaALKAADFKS 338
gi 27376163  262 NALGVPGAQQWVndLPNEQNKRFVADYRKKYpnlrPTYYGAQTYDAAQLINSAVvavkgdts--kkdamkaEMEKANFKS 339
gi 91786886  272 AVGSVSGAMWDAa-LDTPENRKFVADFERKYkr-tPSEYAATAYDAANILNIALgkakagda--kalavavKAAGSEFKS 347
gi 69934163  263 VALGSVTVDYWSpdIDTPANVKFVEDFKERYgr-lPSNYAAAAYDLIPYLKAAVeqsggdik--drdavreALIRADYES 339
gi 84684176  252 AVLGSQTTQEWDptLDNEANARFVADYKAQFgg-yPSYYAAQAYDSIMLIASAVakvgnte---dtdalraALKESDFDS 327
                        330       340
                 ....*....|....*....|..
Feature 1                              
gi 28971615  335 LRGNFKFNTnQFPMDSFYLREV 356
gi 46201655  345 VRGAFRFDTnHSPSVNVYLRRT 366
gi 146279299 335 VRGEFAFGPnHFPLQDFYVTQV 356
gi 158424815 378 VRGSFAFNTnGFPIQDFYVVKA 399
gi 121605358 339 IRGPFRFNSnNMPVQNYYAFQT 360
gi 91786894  339 LRGDFRFGNnNFPIQGMHIMEV 360
gi 27376163  340 LRGAFKYGNnHIPVQSFYLQDV 361
gi 91786886  348 VRGPFAFNNnNLPVQNYYAFET 369
gi 69934163  340 VRGRYSLARnHFPIDNYRSLEI 361
gi 84684176  328 VRGEFTYGNnNIPIQNFYLREV 349

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