5KC9,3OM0,3O21,3H6G


Conserved Protein Domain Family
PBP1_iGluR_non_NMDA-like

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cd06368: PBP1_iGluR_non_NMDA-like 
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N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-D-aspartate) subtypes of ionotropic glutamate receptors
N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the non-NMDA (N-methyl-D-asparate) subtypes of ionotropic glutamate receptors. While this N-terminal domain belongs to the periplasmic-binding fold type 1 superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type 2. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Glutamate mediates the majority of excitatory synaptic transmission in the central nervous system via two broad classes of ionotropic receptors, characterized by their response to glutamate agonists: N-methyl-D-aspartate (NMDA) and non-NMDA receptors. NMDA receptors have intrinsically slow kinetics, are highly permeable to Ca2+, and are blocked by extracellular Mg2+ in a voltage-dependent manner. Non-NMDA receptors have faster kinetics, are most often only weakly permeable to Ca2+, and are not blocked by extracellular Mg2+. While non-NMDA receptors typically mediate excitatory synaptic responses at resting membrane potentials, NMDA receptors contribute several forms of synaptic plasticity and are thought to play an important role in the development of synaptic pathways. Non-NMDA receptors include alpha-amino-3-hydroxy-5-methyl-4-isoxazole proprionate (AMPA) and kainate receptors.
Statistics
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PSSM-Id: 380591
Aligned: 10 rows
Threshold Bit Score: 330.481
Created: 18-Dec-2006
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
dimer interface
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                           ##      #                 
5KC9_A      8 HIGAIFEe-----NAAKDDRVFQLAVSDLSLnddi--lqsEKITYSIKVieanNPFQAVQEACDLMTq--GILALVTSTG 78   house mouse
3OM0_A      6 RMAAILDdq--tvCGRGERLALALAREQINGiiev--pakARVEVDIFElqrdSQYETTDTMCQILPk--GVVSVLGPSS 79   Norway rat
3O21_A      7 SIGGLFMr-----NTVQEHSAFRFAVQLYNTnqnt-tekpFHLNYHVDHldssNSFSVTNAFCSQFSr--GVYAIFGFYD 78   Norway rat
NP_505244  26 KIGAIFRe----rEDAHIEAAVRYSVEWLSQrg-----iyGDIDLVIEYidvlDHYDAIKKACKMLEk-dHIVALLGGSH 95   nematode
KHN75082   21 KFGAVLDv----kRDAHLAAAIDYAIQWLNAhg-----ayQHGEHQIELvhsnDYFDAVDTACRLLEk-eKVVALFGSTN 90   dog roundworm
PDM68952   25 KLGAVLRe----rEDAHIAAALEFSVMMLNDnek----itPKVHLQVEYikpdDHYGAIRKACSLVEd-hSVVAVVGPSD 95   Pristionchus paci...
NP_741822  21 RIGLITSh----hLEHSVRTAVNIIVPRINEqivktrgacFITHTSFIAlk-nSHEDLNTKICDLANsevSVIIGVVDRE 95   nematode
3H6G_A      6 RFGGIFEyve-sgPMGAEELAFRFAVNTINRnrtl--lpnTTLTYDTQKinlyDSFEASKKACDQLSl--GVAAIFGPSH 80   Norway rat
CDJ91572   14 ASAIVYNigttaaKGSLAYENIRYGVERWNNdnf----ayTEITLHIVAtd-lYYASFEELMCDVMQh--SVVAVLIPPS 86   barber pole worm
NP_492017  21 KIAIPANlid-evNPVLEFVDFRVQVIPYETkp------lWRIKQESFKivgiSIENGLFSVCNCLIl--GASAIILPEQ 91   nematode
Feature 1                      #                                                            # 
5KC9_A     79 casanal----qsltdaMHIPHLFVQRnpggsprtachlnpspdgeayTLASRPp-vRLNDVMLRLVTelrwqKFVMFYD 153  house mouse
3OM0_A     80 spasast---vshicgeKEIPHIKVGPeetprl---------qylrfaSVSLYPsneDVSLAVSRILKsfnypSASLICA 147  Norway rat
3O21_A     79 qmsmntl----tsfcgaLHTSFVTPSFptda-------------dvqfVIQMRP---ALKGAILSLLSyykweKFVYLYD 138  Norway rat
NP_505244  96 aalnaql----eritddLDIPFLTAIDdlrtd------------mgksKIDFWPr-pQLFEAVVDMFThwrwnRIVLVYE 158  nematode
KHN75082   91 tllnehi----erlanqVDVPFFNVVDdlrsvds--------aavspaKIDLFPg-aQLVEAISDLLAhwrwnRVIIVYS 157  dog roundworm
PDM68952   96 tylndql----srtlgqLDLPLITVNDdfrld------------nhegRLQLFPr-lQLFDAVSDMFKywkwqRITIVYE 158  Pristionchus paci...
NP_741822  96 sgsiiee----qcaelnILFIHYYWTPgyqk-------------kqqtSLNLYPs-mEYSQLMERLINlwrwdNFVYIYS 157  nematode
3H6G_A     81 sssanav----qsicnaLGVPHIQTRWkhqvsd----------nkdsfYVSLYPdfsSLSRAILDLVQffkwkTVTVVYD 146  Norway rat
CDJ91572   87 ddlldesl--iksmchhFQVPCISMKMgnple-----------fvsdyVTSVGPrrgSGAQATSEFLEnlrwtSFLLAYQ 153  barber pole worm
NP_492017  92 ydghlaaaaivqsiadnTNVPCVSLHLspp---------------trpSTHLHPhlnAKSLAVAAFIKrekwkDVVVVFE 156  nematode
Feature 1         #   #  ## #           ## #                           #                      
5KC9_A    154 SEyDIRGLQSFLDQAsr-----lgLDVSLQKVdknishvftslfttmKTEELNRYRDTl--rRAILLLsp-qgAHSFINE 225  house mouse
3OM0_A    148 KAeCLLRLEELVRGFli-----skETLSVRMLdds----------rdPTPLLKEIRDDkv-sTIIIDAna-siSHLVLRK 210  Norway rat
3O21_A    139 TErGFSVLQAIMEAAvq-----nnWQVTARSVgnik-------dvqeFRRIIEEMDRRqe-kRYLIDCev-erINTILEQ 204  Norway rat
NP_505244 159 GDeRIRRLEQLLESEeya----siRFYLIKVHdgdymkaarqvkeleECRLLHKKDCSef-sRLLVDMnp-ehTYTFLLA 232  nematode
KHN75082  158 DVkRIERLEPFMERRrfa----svRFSFVKINrldylkaakeveeleECGFIHRKDCSef-sRLLLDLdp-esTYGFLLA 231  dog roundworm
PDM68952  159 DDaRIRRIKSILESDqfk----ntRFILIRVHdkdymraakevkeseECRYLHKKDCSef-nRVLVDLsp-eqSFNFLLA 232  Pristionchus paci...
NP_741822 158 NYdAPKQLIETLSRLe-------kSPALLRAHtlddsmm-atalalrDTCDRNRCWPKk--nRVLIELsp-neTLTFFDA 226  nematode
3H6G_A    147 DStGLIRLQELIKAPsr-----ynLRLKIRQLpad---------tkdAKPLLKEMKRGke-fHVIFDCsh-emAAGILKQ 210  Norway rat
CDJ91572  154 FDtDLEELAPLIYDRrsshnggvrASVKVRKLpnn---------tddYEPFLKYVRNRlrqtNIVIHSnnitvIYALLQQ 224  barber pole worm
NP_492017 157 EPdELLEITDMITAGhf-----dpDSFSSQLVrlkh--------gddYGNELKHIKNKldryRIVINIpl-qkALHFLEQ 222  nematode
Feature 1                                                                                     
5KC9_A    226 AVETnlaskDSHWVFVNEeisdp--eildlVHSALGRMTVVRQif----pSAKDNQKCmrnnhrissllc----dpqegy 295  house mouse
3OM0_A    211 ASELgmtsaFYKYILTTMdfpil---hldgIVEDSSNILGFSMfntshpfYPEFVRSLnmswrence----------ast 277  Norway rat
3O21_A    205 VVILgkhsrGYHYMLANLgftdi---llerVMHGGANITGFQIvnnenpmVQQFIQRWvrlderefp----------eak 271  Norway rat
NP_505244 233 SLQMgl-ieLKHWFLLTNmelst--mdmelFRYNHARFISPYPvd----sTFLTENRDafnfshfkehitekwamktdns 305  nematode
KHN75082  232 ALQVgl-ieLKHWFLITSmdmrt--ldmelFRHNHARFIAVDAvd----pAFAGENMTvfnyssfvqhisdkwtehigtn 304  dog roundworm
PDM68952  233 ALRMgl-ieLKHWFVLTSmelss--ldmdlFRHNHARFISPNPvdl--sfEKAHGNRTtfsmkgfqqyvlnawnqktngn 307  Pristionchus paci...
NP_741822 227 SLKLgm-isVHNWFLITAlddl----ndhlSQYTHNGMRVSLLtv---skEKWNQNDLaiklpdmyqeyl----akipsn 294  nematode
3H6G_A    211 ALAMgmmteYYHYIFTTLdlfal---dvepYRYSGVNMTGFRIlntentqVSSIIEKWsmerlqappkp------dsgll 281  Norway rat
CDJ91572  225 AKGMnmtepPFSYIFTNTdlslledflnnaYGAFHCNITGLQLvkndpmmKTSLALISeavwvigmavf-------kmke 297  barber pole worm
NP_492017 223 AANMsmcgvLYHYVVMDMdlvtv--didsiRGIEDCNITSFGVhdv-nseYIEDIRQEivhkssir------------lp 287  nematode
Feature 1                                                                                     
5KC9_A    296 lqmlqiSNLYLYDSVLMLANAFHRkledrkwhsmaslncirkstk--pwnggrsmldtikkghitglTGVMEFREd-SSN 372  house mouse
3OM0_A    278 ypgpalSAALMFDAVHVVVSAVRElnrsqeigvkplactsani-----wphgtslmnylrmveydglTGRVEFNSk-GQR 351  Norway rat
3O21_A    272 naplkyTSALTHDAILVIAEAFRYlrrqrvdvsrrgsagdclanpavpwsqgidieralkmvqvqgmTGNIQFDTy-GRR 350  Norway rat
NP_505244 306 rnlkmmEAVFTFDAVYAFANVFNElsshmqmndvpqtlcrkssrnsrkyqhgrslidnivhndlhglSGDLRRLNghPLK 385  nematode
KHN75082  305 rnlrisEAAMMFDAVMLAADAVKIlkpeekimtrcrsptrphrp----fksgakliralrntsirglTGDLRRVSdnPLR 380  dog roundworm
PDM68952  308 ldfklmEAVFAFDAVRAFAKAQKHipqvpysapiatcrrparpar--pfphgkmvgllmknvnekglSGDLRRLTgdEKA 385  Pristionchus paci...
NP_741822 295 prtpfkDFAFIFDSILLACQAGDRriiscgdneavkk------------------fklpivkpfkglTGKISFNGt-SDR 355  nematode
3H6G_A    282 dgfmttDAALMYDAVHVVSVAVQQfpqmtvsslqcnrhkpwr--------fgtrfmslikeahweglTGRITFNKtnGLR 353  Norway rat
CDJ91572  298 lrnpprPSALLCDAQDSWVDGKRMnaairgl------------------------------rgrrqlTGDVRFDGq-GER 346  barber pole worm
NP_492017 288 kkgvpyTTSIWIDTLRLLIRSMKSiqiwdeprcgsswksg------------sdikkrffenplagiSGDLHWAPs-GER 354  nematode
Feature 1                                                
5KC9_A    373 PYVQFEILGTtysetfgkdMRKLATWDs-------EKGLNGSL 408  house mouse
3OM0_A    352 TNYTLRILEKsr-----qgHREIGVWYs-------NRTLAMNA 382  Norway rat
3O21_A    351 TNYTIDVYEMkv-----sgSRKAGYWNe-------YERFVPFS 381  Norway rat
NP_505244 386 SNFSMRIQLLgys----grLDDIGFWEp-------ATNVHVNM 417  nematode
KHN75082  381 SNFSFRILLLgyn----giIDDIGFWEp-------QTDVHVNM 412  dog roundworm
PDM68952  386 SNFTMRIQLLgys----gdLEDIGFWNs-------NVSVDIKP 417  Pristionchus pacificus
NP_741822 356 SDSELHIWEMgit----gaGLHTGIWKstwegskeLTMLAKNI 394  nematode
3H6G_A    354 TDFDLDVISLke-----egLEKIGTWDp-------ASGLNMTE 384  Norway rat
CDJ91572  347 EDLVYYGIGRin-----sqFLKNHDIP--------NSTIKLDL 376  barber pole worm
NP_492017 355 SNYTLHVYRRtl------sFQKFAEWSs------rTRRIASSE 385  nematode

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