3O21,4UQ6,3SAJ,4GPA


Conserved Protein Domain Family
PBP1_iGluR_AMPA

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cd06380: PBP1_iGluR_AMPA 
Click on image for an interactive view with Cn3D
N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the AMPA receptor
N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor, a member of the glutamate-receptor ion channels (iGluRs). AMPA receptors are the major mediators of excitatory synaptic transmission in the central nervous system. While this N-terminal domain belongs to the periplasmic-binding fold type 1 superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type 2. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. AMPA receptors consist of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important roles in mediating the rapid excitatory synaptic current.
Statistics
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PSSM-Id: 380603
Aligned: 32 rows
Threshold Bit Score: 345.418
Created: 17-May-2007
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
dimer interfacetetramer
Conserved site includes 25 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                         ###  ##  #   
3O21_A       7 SIGGLFMr------NTVQEHSAFRFAVQLYNTnqnt--------tekpFHLNYHVDHld------ssNSFSVTNAFCSQF 66   Norway rat
KHN72930     6 RGSYTFPe-----dVDQGVVASLHYSERLHNNnrrn--------pfklELKNHQLKTae-------sDTWSVMNTVCDEL 65   dog roundworm
PAA94641    35 PIGAIFDs------NQIELKNAFFLALQMVDKs--------------rFKLKVNYTMtn------vnSSHSVQQSICHQL 88   Macrostomum lignano
PDM65936   410 PIKSFTIsi----eNGHLVEKAVKYSRDEMNRres----------ppfRLSLDHIEIkke-----ptEAYDMITTVCQEL 470  Pristionchus pac...
CEF66189    29 PIASFTVpg----dREQGVIGALNFTINMYNQd---------------IYSKFKIKHhnkalrnaafDVWGVMKKICSEL 89   Strongyloides ratti
Q10914      24 PLRAFVAstdidndTAHAIIEMLRLAEMTFNAls-------------dVDFDVLLGTrdlppmematMMWNLNRIICDEM 90   nematode
P34299      31 IIKSFGNne----eVSRVALKAMEYTSDHINSrd-------------dVPFKLAFDHrvve--egaaVSWNMVNAVCDEL 91   nematode
BAW94713    48 PIGAILPv------GNNRVDAMFKLALKRHNAqvvlpfspsslgsqpnLRFRVFLQTsv------inDTFTMAQEFCNHM 115  vase tunicate
EEN56986    95 QLVKAVCsrf--grSGDGVYAIFGMNDFASMStmqsycs--slqvpyiTTSYPPITNts-------nVSVSFSFHICSRF 163  Florida lancelet
PAA91335    39 LIGGIFQmd----sQESASHAAFDFAFDQLMLnswfdpq--gtllyryEKVVEYVEDl--------eDSFQMSSAICRLI 104  Macrostomum lignano
Feature 1                                #   #                                                 
3O21_A      67 Sr---GVYAIFGFYDqm--smNTLTSFCGaLHTSFVTPSFptd---------------------advQFVIQMRPALKGA 120  Norway rat
KHN72930    66 Re---GMMVIMCGDGar--ahEAYLGIAEnLEVPLINWDLapvipadgs----------fnkyehslGFEISIRPSTAEI 130  dog roundworm
PAA94641    89 Fp--wGAFAIFGSTNaf--tvDSIQNLVSmFHVPYITPGIvkaen------------------pksqDYVLNIRPRHGKA 146  Macrostomum lignano
PDM65936   471 Ke---GAMGIISLKDgr--gyDSLKGLSEnLEIPLISLNPpsfpp------------------eypsRLEVSLWPSPAEV 527  Pristionchus pac...
CEF66189    90 Qe---GLMIMMAGVDgnqrtyEAYSTVSStMEIPFVNWDIsaispl----------------dnypnNFEVSMRPSNGEL 150  Strongyloides ratti
Q10914      91 Kl---GYMLMLAGTNfk--nyGIYEDIANhMKMPLIDWEPsksenig--------------kttennPMIFSVAPSAEQL 151  nematode
P34299      92 Ke---GAMALLSSVDgk--grEGIRGVSDaLEMPLVSLTAlsnddhq--------------qqqfgnLFEVSVRPPISEL 152  nematode
BAW94713   116 Sq---RTHTIIGFWKas--smNAIISYSDtFNIPWITPSLplpd--------------------qptKHVINLHPKFETF 170  vase tunicate
EEN56986   164 GrsgdGVYAIFGMNDfa--smSTMQSYCSsLQVPYITTSYppit-------------------ntstSFVLSIRPNIVPA 222  Florida lancelet
PAA91335   105 Sr---GAIVIFGPVHyk--tiPMVLSITDyFEVAYITTSFvdklpsdrilhrralfngiadrrqpqgRFIVRLRPVITPA 179  Macrostomum lignano
Feature 1                       #     #   #  ##  ##         ## #                 #             
3O21_A     121 ILSLLSyy-kWEKFVYLYDTErGFSVLQAIMEAAVQNn----WQVTARSVGNIkdv--qeFRRIIEEMDRRQe------- 186  Norway rat
KHN72930   131 IADLILhk-qWTQIVYMHDGKnSAITMQWIYHHLHKKs---nMSVNTEMVRIPrda--keFPEFLRRFHANRmmnd---- 200  dog roundworm
PAA94641   147 IIEVLEmy-qWTTFAYVVNSHeGLHRFQETVRIYQRDhfyrdLNVQLIYVANThva--ypELARLDSLLKSQsr------ 217  Macrostomum lignano
PDM65936   528 VADFIIhk-gWSDLIMMSDTHnSGISFPYLWSKVRERs---nETIVGQVIQLPlee--ekFDDFLRKFNLMRgdk----- 596  Pristionchus pac...
CEF66189   151 IANIIVqk-rWQSFIYLHDGKvATQNLELIYFYAQKLs---nLSITSELVKLPqev--idYGEFLRKFNMKYgrdn---- 220  Strongyloides ratti
Q10914     152 LIDYIQyk-gWRDVVYIHDGKnADRTLRTMFSYLHEKsp--kYQLFVDNYVAPsde--emFKEFLNEFHRRIstqhtlks 226  nematode
P34299     153 LADFIVhk-gWGEVLVLIDPVhASLHLPSLWRHLRTRt---nTSVKASMFDLPade--kqFEAYLMQFNMMRnne----- 221  nematode
BAW94713   171 LLDFLFkl-gWKEFTLVYDQKeVHLPVKAAIAFCLERg----LRIQVRNLAGVd-----nILPTLKEIACKKe------- 233  vase tunicate
EEN56986   223 VYEVIRkrykWRMFTYLYDDAeGLASLQQMIKKAKGKk----IKIKARKLGGIn-----nTVSTLNDMNNSTge------ 287  Florida lancelet
PAA91335   180 VVELIDhe-kWERIFFLYDSKsALLRLREIFERYKGKes--tISADIRDLTDGgpgaaatVLRYINEKSMETl------- 249  Macrostomum lignano
Feature 1                                                                                      
3O21_A     187 ------------kRYLIDCev-erINTILEQVVILgkhsrGYHYMLANLGftdillERVMHGGANITGFQIvnnenpmVQ 253  Norway rat
KHN72930   201 ----------sskRVIVDAstsfrQQQMLAAIRSAqfsqmQYHYVVANFDflphdvELFENGNINISGFQIinreikeYW 270  dog roundworm
PAA94641   218 ------------kHVVIDLdppevISDFLPQIREMgmnrrEYHYLATGMSvtdidtEGLKHSGVNLTGFQLldyknlkVK 285  Macrostomum lignano
PDM65936   597 -----------inRILIDTtstsrLQKLLSTIRAAqfnqgNYHYVIVNFEflpydvAMFENGNINISGFQIidrehkqYW 665  Pristionchus pac...
CEF66189   221 ----------eprRIILDItssykQQQFLASIRGAqfnqqNYHYLVVNFDflpydvEMFQNGNINITGFQIvskdtkiHN 290  Strongyloides ratti
Q10914     227 ndsseeidepipvNVIVDLegsyrTRAFLRALEESvlvkkEYHYVFSNFDvdetdlSGFHFSLINITIFRIfdk--nnKK 304  nematode
P34299     222 -----------tnRILIDCaspkrLKKLLINIRSAqfnqaNYHYVLANYDflpydqEMFQNGNINISGFNIinkdgreYW 290  nematode
BAW94713   234 ------------yKVLFDVsl-qrSMQTLEKIKIMgmlsmDYHYIFSDLSlidhdlRQFAYGASNLTFLGLvdksfelYD 300  vase tunicate
EEN56986   288 ------------rNIIIDLdr-ktTEAVLRMITLLqmltsPWHYVIMNPDfsimdrEVLSYGKANITSFQLidptngtAM 354  Florida lancelet
PAA91335   250 ------------kRVFLDLedrevQQRIFDEIKAIrgnrlDYHYLIMGSDinevnqTMFLHGGVNITGFTVlnfsdptFA 317  Macrostomum lignano
Feature 1                                                                                    ##
3O21_A     254 QFIQRWvrlderefp--------eaknaplkyTSALTHDAILVIAEAFRYlrrqrvdv------------srrgsagDCL 313  Norway rat
KHN72930   271 NLKKFLanetsrrq----------inrmqmeaRAAFVHDAVIVAKAGLEStlrrndslfrqsf-rhgelynrgypgiYCH 339  dog roundworm
PAA94641   286 DLKMRWedlciqkrli------csgpigyplyEIALLMDGVEVFTRALDSllskpdtrrqlld--slaamrnpanrtDCV 357  Macrostomum lignano
PDM65936   666 DLKKHLeekkdeseis-------ldhytditaRVALAHDTVIAAFHGFLRalsqndsifsksf-rhgklynrgyrgiYCD 737  Pristionchus pac...
CEF66189   291 LLKKSIdfnrqqdrn---------eknidleaRLAFVHDGVLVVKKSLENslkkndsifyqnf-rhgelynrgfkgiYCH 360  Strongyloides ratti
Q10914     305 FLKTRAefhdvyrgg--------fsntdsiptAAAFAHDAILVAGKALQIamnehgkgifdksfvrhqlfnrgrkglYCR 376  nematode
P34299     291 SLKKHLktssslg------------ggddvsvEAAVGHDAMLVTWHGFAKclqandslfhgtf-rhrrffnrgfpgiYCD 357  nematode
BAW94713   301 SVLQGQtnpff----------------ntvgsESALIYDAFTAMASGMRQviadglvfete-----iqdeinrvervTCH 359  vase tunicate
EEN56986   355 DVLASWkgldpdtyp--------gagkdmmgyKAALAFDVVRVISNAFWKmkdsgkd-------------lslksspTCD 413  Florida lancelet
PAA91335   318 RFRDEFwfsdarlrayptaldkldpssrivplSVALMIDGFSAFFKAHQKltpqrrn--------------srdhkeACM 383  Macrostomum lignano
Feature 1      ##        ##                                                                    
3O21_A     314 AN--------PAVPWSQGi---------------------------dIERALKMVQVQGm----TGNIQFDTYGRRTNYT 354  Norway rat
KHN72930   340 PNldfnnphrPFTTFEHGq---------------------------aIARALRGLKLGTddgalTGRIEFDRFGLRKNFD 392  dog roundworm
PAA94641   358 VKd-------DSAPSAIAshrlrnpnvyayhnlgssqtyktshvgelLMKEMTATRFDGy----SGSVAFDSNGFRSNFT 426  Macrostomum lignano
PDM65936   738 PStdrenparPYSSFEHGd---------------------------mIGAALHGIDIDSrdgtlTGRIQFDRFGHRINYH 790  Pristionchus pac...
CEF66189   361 PQydkksenrPFSTFEHGk---------------------------lIAKSLHDVKIGPedgtlTGHIEFDRLGFRKNYA 413  Strongyloides ratti
Q10914     377 PHedqt-esrQFETFEHGk---------------------------kIAEAIKKVVLTDkdgtlTGRIQFDKVTGKRTNF 428  nematode
P34299     358 PLsdrshpnrPFSSFEHGk---------------------------tIGVAFRNMKIGHkegtlTGNIEFDRFGNRKNFD 410  nematode
BAW94713   360 QM--------SILPLNTGs---------------------------eISKAIKEVKFQGl----TGNVEFDQQGQRINYS 400  vase tunicate
EEN56986   414 SL--------RASNYGEQ-----------------------------IRKFISKVNVSGl----TGNIQFDDFGRRVKYA 452  Florida lancelet
PAA91335   384 PPe------tPAFPAENIt----------------------------AVFKGRVSGFPGv----TGWVQFDQAGYRENYR 425  Macrostomum lignano
Feature 1                                       
3O21_A     355 IDVYEMkv------sgSRKAGYWNEYERFVPFS 381  Norway rat
KHN72930   393 VTVIDLvsntk-safnRKEMMIWKQGVGFFPNR 424  dog roundworm
PAA94641   427 IDVMELkr------srFWPVGYWHTHSGLEKLY 453  Macrostomum lignano
PDM65936   791 VNVIDLvsnmr-svynRKEALSWVQGKGFILNQ 822  Pristionchus pacificus
CEF66189   414 VTVIDLissnt-snfnQKEVTVWKQGIGFVNDE 445  Strongyloides ratti
Q10914     429 SAEIVEikpgvnslnsIWERFQWAEGEGFLLGG 461  nematode
P34299     411 VSIVDLvsntk-atfnSKEVLAWRQGVGFFSNR 442  nematode
BAW94713   401 VRIYALdr------lgLNSIGTWTDSSEEGDGI 427  vase tunicate
EEN56986   453 IQVMELqrp----kasLTKVAEWLHRWPSGLSY 481  Florida lancelet
PAA91335   426 VQGIEAgvr-----seLQPISIWSNGQFRLTRN 453  Macrostomum lignano

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