4UQ6,5VHW,4U1X,2WJW


Conserved Protein Domain Family
PBP1_iGluR_AMPA_GluR2

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cd06389: PBP1_iGluR_AMPA_GluR2 
Click on image for an interactive view with Cn3D
N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA receptor
N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the GluR2 subunit of the AMPA (alpha-amino-3-hydroxy-5-methyl-4-isoxazolepropionic acid) receptor. The AMPA receptor is a member of the glutamate-receptor ion channels (iGluRs) which are the major mediators of excitatory synaptic transmission in the central nervous system. AMPA receptors are composed of four types of subunits (GluR1, GluR2, GluR3, and GluR4) which combine to form a tetramer and play an important role in mediating the rapid excitatory synaptic current. Furthermore, this N-terminal domain of the iGluRs has homology with LIVBP, a bacterial periplasmic binding protein, as well as with the structurally related glutamate-binding domain of the G-protein-coupled metabotropic receptors (mGluRs).
Statistics
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PSSM-Id: 380612
Aligned: 8 rows
Threshold Bit Score: 771.879
Created: 11-Feb-2008
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
dimer interfacetetramer
Conserved site includes 25 residues -Click on image for an interactive view with Cn3D
Feature 1:dimer interface [polypeptide binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                  ###  ##  #                   ##  ##  # 
4UQ6_A          7 QIGGLFPRGADQEYSAFRVGMVQFSTSEFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKkSVNTITSFCGTL 86   Norway rat
5VHW_A          4 QIGGLFPRGADQEYSAFRVGMVQFSTSEFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKkSVNTITSFCGTL 83   Norway rat
4U1X_A          4 QIGGLFPRGADQEYSAFRVGMVQFSTSEFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKkSVNTITSFCGTL 83   Norway rat
2WJW_A          4 QIGGLFPRGADQEYSAFRVGMVQFSTSEFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKkSVNTITSFCGTL 83   human
NP_001001775   28 QIGGLFPRGADQEYSAFRVGMVQFSTSEFRLTPHIDNLEVANSFAVTNAFCSQFSRGVFAIFGFYDKkSVNTITSFCGTL 107  chicken
P42262         28 QIGGLFPRGADQEYSAFRVGMVQFSTSEFRLTPHIDNLEVANSFAVTNAFCSQFSRGVYAIFGFYDKkSVNTITSFCGTL 107  human
ACM69011       27 QIGGLFPRGADQEYSAFRVGMLLYSTSEFRLTPHIDNLEVANSFAVTNAFCSQFSRGVFAIFGFYDKkSVNTITSFCGTL 106  African clawe...
AAQ08957       27 QIGGLFPRGADQEYSAFRIGMVQFGTAEFRLTPHIDNLEVANSFAVTNCFCSQFSRGVYAIFGFYDKkSVNTITSFCGTL 106  zebrafish
Feature 1                                                     #         #  ##  ##      # #        
4UQ6_A         87 HVSFITPSFPtDGTHPFVIQMRPDLKGALLSLIEYYqWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNInndk 166  Norway rat
5VHW_A         84 HVSFITPSFPtDGTHPFVIQMRPDLKGALLSLIEYYqWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNInndk 163  Norway rat
4U1X_A         84 HVSFITPSFPtDGTHPFVIQMRPDLKGALLSLIEYYqWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNInndk 163  Norway rat
2WJW_A         84 HVSFITPSFPtDGTHPFVIQMRPDLKGALLSLIEYYqWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNInndk 163  human
NP_001001775  108 HVSFITPSFPtDGTHPFVIQMRPDLKGALLSLIEYYqWTKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNInndr 187  chicken
P42262        108 HVSFITPSFPtDGTHPFVIQMRPDLKGALLSLIEYYqWDKFAYLYDSDRGLSTLQAVLDSAAEKKWQVTAINVGNInndk 187  human
ACM69011      107 HVSFITPSFPtDGTHPFVIQMRPDLKGALLSLIEYYqWDKFAYLYDSDRGLTTLQAVLDAAAEKKWQVTAINVGNInndr 186  African clawe...
AAQ08957      107 HVSFITPSFPlDGNQQFIIQMRPDIKGPLLSLIEYYkWDKFAYLYDSDRGLTTLQVVLDTAAEKKWQVTAINVGNMkder 186  zebrafish
Feature 1                   #                                                                     
4UQ6_A        167 kdetYRSLFQDLELKKerRVILDCERdkVNDIVDQVITIgkHVKGYHYIIANLGFtdgdlLKIQFGGAEVSGFQIVDYDD 246  Norway rat
5VHW_A        164 kdetYRSLFQDLELKKerRVILDCERdkVNDIVDQVITIgkHVKGYHYIIANLGFtdgdlLKIQFGGAEVSGFQIVDYDD 243  Norway rat
4U1X_A        164 kdetYRSLFQDLELKKerRVILDCERdkVNDIVDQVITIgkHVKGYHYIIANLGFtdgdlLKIQFGGAEVSGFQIVDYDD 243  Norway rat
2WJW_A        164 kdemYRSLFQDLELKKerRVILDCERdkVNDIVDQVITIgkHVKGYHYIIANLGFtdgdlLKIQFGGANVSGFQIVDYDD 243  human
NP_001001775  188 kdetYRSLFQDLEVKKerRVILDCERdkVNDIVDQVITIgkHVKGYHYIIANLGFtdgdlSKIQFGGANVSGFQIVDYDD 267  chicken
P42262        188 kdemYRSLFQDLELKKerRVILDCERdkVNDIVDQVITIgkHVKGYHYIIANLGFtdgdlLKIQFGGANVSGFQIVDYDD 267  human
ACM69011      187 kdetYRSLFQDLEIKKerRVILDCERdkVNDIVDQVITIgkHVKGYHYIIANLGFtdgdlSKIQFGGANVSGFQIVDYDD 266  African clawe...
AAQ08957      187 kdeaYRSLFQDLENKKerRVILDCEQdkVKDIMEQVITIgrHVKGYHYIIANLGFvdgdlSKIQYGGANVSGFQIVDFDD 266  zebrafish
Feature 1                                                                      ### # #            
4UQ6_A        247 slVSKFIERWSTLEEKEYPGAhtatikyTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGveIERA 326  Norway rat
5VHW_A        244 slVSKFIERWSTLEEKEYPGAhtatikyTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGveIERA 323  Norway rat
4U1X_A        244 slVSKFIERWSTLEEKEYPGAhtatikyTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGveIERA 323  Norway rat
2WJW_A        244 slVSKFIERWSTLEEKEYPGAhtttikyTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGveIERA 323  human
NP_001001775  268 plVSKFIQRWSTLEEKEYPGAhtstikyTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGHGveIERA 347  chicken
P42262        268 slVSKFIERWSTLEEKEYPGAhtttikyTSALTYDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGQGveIERA 347  human
ACM69011      267 slVAKFIQRWSTLEEKEYPGAhtttikyTSALTFDAVQVMTEAFRNLRKQRIEISRRGNAGDCLANPAVPWGHGveIERA 346  African clawe...
AAQ08957      267 plVSKFDQRWEALEEKEYPGAdsk-iryTSALTYDAVQVMTEAFRYLHKQRIDISRRANNGDCLANPAVPWAQGveIERA 345  zebrafish
Feature 1                                                             
4UQ6_A        327 LKQVQVEGLSGNIKFDQNGKRINYTINIMELktnGPRKIGYWSEVDKMVLTE 378  Norway rat
5VHW_A        324 LKQVQVEGLSGNIKFDQNGKRINYTINIMELktnGPRKIGYWSEVDKMVLTE 375  Norway rat
4U1X_A        324 LKQVQVEGLSGNIKFDQNGKRINYTINIMELktnGPRKIGYWSEVDKMVVTL 375  Norway rat
2WJW_A        324 LKQVQVEGLSGNIKFDQNGKRINYTINIMELktnGPRKIGYWSEVDKMVVTL 375  human
NP_001001775  348 LKQVQVEGLTGNIKFDQNGKRINFTINVMELkstGPRKIGYWSEVDKMVVNP 399  chicken
P42262        348 LKQVQVEGLSGNIKFDQNGKRINYTINIMELktnGPRKIGYWSEVDKMVVTL 399  human
ACM69011      347 LKQVQVEGLSGNIKFDQNGKRVNYTINIMELksnGPRKIGYWSEVDKMVVTI 398  African clawed frog
AAQ08957      346 LKQVRVDGLTGNIQFDQYGKRVNYTVNVMELksnGAVKIGYWNEVDKMVVTK 397  zebrafish

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