Conserved Protein Domain Family
PBP1_iGluR_delta_2

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cd06391: PBP1_iGluR_delta_2 
N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family
N-terminal leucine-isoleucine-valine binding protein (LIVBP)-like domain of the delta2 receptor of an orphan glutamate receptor family. While this N-terminal domain belongs to the periplasmic-binding fold type 1 superfamily, the glutamate-binding domain of the iGluR is structurally homologous to the periplasmic-binding fold type 2. The LIVBP-like domain of iGluRs is thought to play a role in the initial assembly of iGluR subunits, but it is not well understood how this domain is arranged and functions in intact iGluR. Although the delta receptors are a member of the ionotropic glutamate receptor family, they cannot be activated by AMPA, kainate, NMDA, glutamate, or any other ligands. Phylogenetic analysis shows that both GluRdelta1 and GluRalpha2 are closer related to non-NMDA receptors. GluRdelta2 was shown to function as an AMPA-like receptor by mutation analysis. Moreover, targeted disruption of GluRdelta2 gene caused motor coordination impairment, Purkinje cell maturation, and long-term depression of synaptic transmission. It has been suggested that GluRdelta2 is the receptor for cerebellin 1, a glycoprotein of the Clq and tumor necrosis factor family that is secreted from cerebellar granule cells.
Statistics
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PSSM-Id: 380614
Aligned: 3 rows
Threshold Bit Score: 873.211
Created: 19-Dec-2007
Updated: 2-Oct-2020
Structure
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Aligned Rows:
 
putative dimer
Feature 1:putative dimer interface [polypeptide binding site]
Evidence:
  • Comment:based on sequence and structure similarity to Mus musculus glutamate receptor ionotropic, delta-1

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                    ###   ##                          
O43424      28 HIGAIFDESAKKDDEVFRTAVGDLNQNEEILQTEKITFSVTFVDGNNPFQAVQEACELMNqGILALVSSIGCTSAGSLQS 107  human
Q68Y21      28 HIGAIFDESAKKDDEVFRMAVADLNLNNEILETEKITVSVEFVDGNNPFQAVQEACELMNrGILALVSSIGCMSAGSLQS 107  zebrafish
NP_032193   28 HIGAIFDESAKKDDEVFRTAVGDLNQNEEILQTEKITFSVTFVDGNNPFQAVQEACELMNqGILALVSSIGCTSAGSLQS 107  Mus musculus
Feature 1         #                                                       #    #    ###  #  ## 
O43424     108 LADAMHIPHLFIQRstaGTPRSGCgltrsnrnDDYTLSVRPPVYLHDVILRVVTeyaWQKFIIFYDSEYDIRGIQEFLDK 187  human
Q68Y21     108 LADAMHIPHLFIQRapaGTPRSSCppttraqpDDYTLFVRPPVYLNDVIFQVVMeytWQKFIIFYDTDYDIRGIENFLDQ 187  zebrafish
NP_032193  108 LADAMHIPHLFIQRstaGTPRSGCgltrsnrnDDYTLSVRPPVYLNEVILRVVTeyaWQKFIIFYDSEYDIRGIQEFLDK 187  Mus musculus
Feature 1       #    # ####      # ##  ##         #                     #  ##                  
O43424     188 VSQQGMDVALQKVENNiNKMITTLFDTMRIEELNRYRDTLRRAILVMNPatAKSFITEVVETnLVAFDCHWIIINEEIND 267  human
Q68Y21     188 TSQQGMDVSLQKVESNiNMMITGMFRTMRVEELHRYRDTLRRAVLFMSPatAKAFITEVVETnLVAFDCQWIIINEEISD 267  zebrafish
NP_032193  188 VSQQGMDVALQKVENNiNKMITTLFDTMRIEELNRYRDTLRRAILVMNPatAKSFISEVVETnLVAFDCHWIIINEEIND 267  Mus musculus
Feature 1                                                                                      
O43424     268 vDVQELVRRSIGRLTIIRQTFPVPQNISQRCFRGNHRISSTLCDPKDPFAQNMEISNLYIYDTVLLLANAFHKKLEDRKW 347  human
Q68Y21     268 mDVQELVMKSIGRLTLVRQTFPLPQNTSQRCVRNNHRINTSLCDPKDPKAQMLEITNRYIYDTVLLLANTFHRKLEDRKW 347  zebrafish
NP_032193  268 vDVQELVRRSIGRLTIIRQTFPVPQNISQRCFRGNHRISSSLCDPKDPFAQNMEISNLYIYDTVLLLANAFHKKLEDRKW 347  Mus musculus
Feature 1                                                                                      
O43424     348 HSMASLSCIRKNSKPWQGGRSMLETIKKGGVSGLTGELEFGENGGNPNVHFEILGTNYGeelGRGVRKLGCWNPVTGLNG 427  human
Q68Y21     348 HSMASLSCIRKGSKPWQGGKSMLETVKKGGVSGLTSLLEFNDNGSNPNIHFEILGTNYGedrGRGVSRLATWDPIHGLNG 427  zebrafish
NP_032193  348 HSMASLSCIRKNSKPWQGGRSMLETIKKGGVNGLTGDLEFGENGGNPNVHFEILGTNYGeelGRGVRKLGCWNPVTGLNG 427  Mus musculus
Feature 1        
O43424     428 SL 429  human
Q68Y21     428 TL 429  zebrafish
NP_032193  428 SL 429  Mus musculus

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