Conserved Protein Domain Family
ASCH_yqfb_like

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cd06552: ASCH_yqfb_like 
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ASC-1 homology domain, subfamily similar to Escherichia coli Yqfb. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Statistics
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PSSM-Id: 119344
View PSSM: cd06552
Aligned: 46 rows
Threshold Bit Score: 75.355
Threshold Setting Gi: 163736737
Created: 12-Aug-2008
Updated: 17-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1TE7_A         5 DITFFq---RFQDDILAGRKTITIRDe-SESh--FKTGDVLRVGrfed-------------dgyFCTIEVTATSTVTld- 64
gi 134098800 137 PALHMh--pAYLDAVRAGTKTTTVRV--HDPvspGPVRLVFDHGdgt---------------stRIDAVVTEVRAASlr- 196
gi 62425271  138 LLRFHp---GYYESTVSGQKTLTVRWqeSHS---PGPALAYFEHte----------------hgPLPVDITSVDTCRlse 195
gi 114778651  10 DISNLvrhpKLVEAAVRGMKTRQGRD--GVY---AWPEETFELE--------------------GVTFVVTSLTRERlg- 63
gi 89100880   10 RLVTVp---ADIEKVLKGEKTATRRN--GRY---ADIGEIMVLK--------------------DKEFIVTSVYSQTlg- 60
gi 152966350 134 RLRFRa---SHLPAVRDGSKRATLRL--DDP---VQVGPALLVFepartdtagdlnagdvddevTLAGRITSTTAKTva- 204
gi 76800888    7 DALLPn--dHVKTAVLDGDITQLSRGasNRY---AEAGDTFELE--------------------GTTFEVTAVEERTlg- 60
gi 55379045    8 EILPNd---HVQQMAAEGRVTQMHRG--HQY---ADEGDTFEID--------------------GTEFEVTDVTHRTlg- 58
gi 148508086  22 DALLPn--eHVKNAVRNGDITQLSRGa-TNKy--ASEGDTFSID--------------------EDVFVISSVDKRTlg- 75
gi 153895856  47 DLLPNd---RVKQAALDGDVTQLHRG--NRY---GEEGDAFEVD--------------------GVTFELTEVTERTlg- 97
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*
1TE7_A        65 tLTEKHAEQENm-tLTELKKVIADIYPgq------tQFYVIEFKC 102
gi 134098800 197 eLTDEDARRDGfddRQALLEALEFHYPgia---patQVDVVHFET 238
gi 62425271  196 lTPQLLHLREGs-sVDSYVANLRKHYPtmp---qdaRVDIVTFRL 236
gi 114778651  64 dMTDADAQAEGypnLAAYKDLILRMHKgmqw-npdaLVWVHRFRK 107
gi 89100880   61 eLTDEHARQEGfgsVEDYKQTILSYHKgmpw-lphmKVWVHEFKP 104
gi 152966350 205 eISDEEAREDGfadAASVLPGLRNYYPhls---sddYVVLVRFDV 246
gi 76800888   61 dLTDDDARREGspsLEAYRERMQRAHPggfe--wddESDILTYRF 103
gi 55379045   59 dMTDEDAQREGsedLAAYKNRMKKVHGsfew-dddsEVVRHRFAP 102
gi 148508086  76 dLTDLDAQREGsesLTAYRERMQRVHTdgfe--wdpTNKILTYQF 118
gi 153895856  98 dMTDEDAKREGspsLEAYKERMVHAHGgsfdwdddaDVVRHRFRR 142
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