1T62


Conserved Protein Domain Family
ASCH_Ef3133_like

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cd06553: ASCH_Ef3133_like 
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ASC-1 homology domain, subfamily similar to Enterococcus faecalis Ef3133. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Statistics
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PSSM-Id: 119345
View PSSM: cd06553
Aligned: 63 rows
Threshold Bit Score: 139.235
Threshold Setting Gi: 163760730
Created: 12-Aug-2008
Updated: 17-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1T62_B        23 PDVWMFGdgsseMGNRLGQLVVSGRKTATCSSld-iYKMEEeqlPKAGQYDIILDgqsQPLAIIRTTKVEIMPmnKVSES 101
gi 158339902  27 YLVEQFGds-peMANELGQLVLAGTKTATCSAlw-eWEAEHsplPTVGLKTIVVDgseTPFCIIETTEVNICPfdQIDAQ 104
gi 83859910   27 RGVDAFGds-peMMDELLALVLSRTKQATASLar-wYVDDPeglPKPGDLWLITDgrgVPACVTRTTRVDVMPirEVDAQ 104
gi 146337309  13 LRSFAFGdg-peLADKLLDLVIKGVKTATCSTe---DEPNT---SKPGERWIVLDgqgRPRCVIESTEISYRRfdEVDAA 85
gi 114571082  23 EDVFAFGds-pgLADELLALVLADRKKATASHsr-wHELGEeplPRPGDLALVLDgrgKPACIIRTSRVDRHPikDTTEE 100
gi 148274043  37 HTVEHFGdh-arLADELLGIVLSGRKRATAELva-dFLARGdevPRIGSHWIACDstgAPRIVIRSTELRVGPftSADAA 114
gi 114797877  10 LKQFRFGds-peLADRLASLVVAGVKKATCSAv---ANGFE---AALGEQQVVLSgegRPVAVIETLSLDVLPfeKVTPA 82
gi 126734576  15 AGTFKFGds-aeLCQRLIALVRQGRKTATCAAls-dFEGEPeamPVVGRCDIAANwdgTPALVIRTTKMQEIRycDVTED 92
gi 122499254  25 AETSIFGds-atLSAELLALVRKGVKRATCTAmadvASGEDa-mPQIGRIDIFTTfdgRPALATRTLELRLVRfcDMTEE 102
gi 118591989  13 AETFKFGdn-adLCAQLIALVRAGKKTATCGAlq-sYEDGGevlPVHGRRDIALNwddTPALVIETLEVSVVRfcDVGED 90
                         90       100       110       120
                 ....*....|....*....|....*....|....*....|....*....
1T62_B       102 FAQAEGEGdltlDYWYEEHARFFKEELApyqlqfypdMLLVCQSFEVVD 150
gi 158339902 105 FAYDEGEDdrtlESWQREHWKYFSRALPkidkepthnMLLVCERFQIVY 153
gi 83859910  105 FAWDEGEGdrsyDYWITEHRKFWRREAAregfeysddLDVVCERFELVW 153
gi 146337309  86 FAFDEGEGdrslNYWREAHRTYFTRLGKfs-----dtMMLMCERFRLVE 129
gi 114571082 101 FAWAEGEGdrslSWWMDAHITYWTREAAregyafntgQDAIFHRFDRIW 149
gi 148274043 115 FAHDEGEDdlslESWRTQHRIYWERVSAargaawsedDEIVFERFAVVW 163
gi 114797877  83 QAAQEGEGdlsyPYWRDAHEAYFQREGTya-----pdMDVIFETFRLVA 126
gi 126734576  93 MALAEGENdt-lLGWRKDHKAYFKRNGGfh-----peMMLVFEHFELVE 135
gi 122499254 103 MALAEGEDet-lAGWQEGHGRYYRRLGIfa-----pdMELIWERFEVVE 145
gi 118591989  91 FALAEGENed-lAGWRQDHQTFFERNGGfd-----peMDLVCERFRVVE 133
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