Conserved Protein Domain Family
ASCH_PF0470_like

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cd06555: ASCH_PF0470_like 
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ASC-1 homology domain, subfamily similar to Pyrococcus furiosus Pf0470. The ASCH domain, a small beta-barrel domain found in all three kingdoms of life, resembles the RNA-binding PUA domain and may also interact with RNA. ASCH has been proposed to function as an RNA-binding domain during coactivation, RNA-processing and the regulation of prokaryotic translation.
Statistics
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PSSM-Id: 119347
View PSSM: cd06555
Aligned: 22 rows
Threshold Bit Score: 108.097
Threshold Setting Gi: 90412901
Created: 12-Aug-2008
Updated: 17-Jan-2013
Structure
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Program:
Drawing:
Aligned Rows:
PubMed ReferencesClick to see Conserved Features Help

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
1XNE_A         4 YRLYLKdEYLEMVKSGKKRIEVRVAYPQlkDIKRGDKIIFNd------lIPAEVVEVKKYEtFRQVLREEPIDKifpd-k 76
gi 170764002   4 HVMNLSpDSFEMIEIGTKTIEMRLYDEKrkKISKGDYINFIstmnnkkqLEVKVIDIYKYNnFEELYKEFNKVKlgy--r 81
gi 195978888   3 HEMMLTpRPFAMIEAGVKTIELRLNDEKrqAIKVGDWICFYctedhsqiLQAEVVGLHYFDdFRQLYQQLPLEKcgyrqe 82
gi 15613379    3 HAMGLFkVPFESIKAGRKTVEVRLNDAKrrQVAVGDTIEFTklpekeetLKVVVTKLRSYDtFEAMYKEIPFEAfdce-g 81
gi 163816572 159 FEMKLNkEPFRKIQSGKKTIELRLFDEKrsQIREGDAIHFFmvgepdqkLLVEVLKIHRFPsFKELYENLPLSKcgyesd 238
gi 191639491   1 MRMGLAhDQFLLVKQGSRTIEIRLNDEKrqQLKVGDTIVFEdttt-aqtQRRTVSALEKFTsFAELYHKYRGPQvgsapt 79
gi 28379445    2 TTMQLIhPQWLLIKSGLKTIEIRLNDAKrqALQVGDIVNFIdltt-gqqLTTQLIDITRFAsFESLLSEYTAVQvgsapg 80
gi 116491341   1 MIMGLNhSQFLLMQQGDKSVEIRLNDRKrsFLKEGSLITFIdlkt-dkkIEVIVKKIYKFKtFCELYKSFTSTEvgsatn 79
gi 188590002   3 FNMNLQeKYFNYIVNGSKDIEIRLLDEKrsKLSVGDIIIFNshd---ksIKVKVINIKLFNsFSDLLSNINGKRigfs-t 78
gi 116618236   1 MLMGLNhDQFVLVQRGTKTIEIGLYDEKraQLKIGHKILFTdlen-nnqIMVSVKQLYKFTtFADLYAQFNGAKvgsnst 79
                         90       100       110
                 ....*....|....*....|....*....|.
1XNE_A        77 psFEKALKRFHNMYPkwkeyrYGVLAIKFRV 107
gi 170764002  82 edEIAHYTDMEQYYSkediakYGVIGIELEV 112
gi 195978888  83 elSQAKPEDMELYYSkdrqakYGVVGIELKR 113
gi 15613379   82 wtMDEMLDGTYEIYTseqeneWGALPIYVER 112
gi 163816572 239 drAAADYRDMLAYYSeeeekkYGVVGIEFRL 269
gi 191639491  80 dsETKMVADTYQLYTawqeasFGVLAIHLQP 110
gi 28379445   81 tpVTQMVQEMLTLYSpvqvaqSGVVALQVRP 111
gi 116491341  80 dsLEKMVNDTYKIYSpaqernFGVLAIRIRL 110
gi 188590002  79 ssQNVILNELYSIYSeskvckYKVMCIEFKK 109
gi 116618236  80 dnIEKIVNDTYEIYTpeqerhYGVLAIEMLL 110
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