2AK4,1TVD


Conserved Protein Domain Family
IgV_TCR_delta

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cd07706: IgV_TCR_delta 
Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain
The members here are composed of the immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs, but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is located at the N-terminus of the receptor. Members of this group contain standard Ig superfamily V-set AGFCC'C"/DEB domain topology.
Statistics
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PSSM-Id: 409503
Aligned: 6 rows
Threshold Bit Score: 176.556
Created: 6-Nov-2008
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 13 residues -Click on image for an interactive view with Cn3D
Feature 1:heterodimer interface [polypeptide binding site]
Evidence:
  • Structure:1TVD; human gamma/delta T cell receptor delta chain IgV domain forms a heterodimer interface with the gamma chain IgV domain, defined using 4.0 A contacts
    View structure with Cn3D
  • Citation:PMID 8976572

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                       # # #   # # #  #                              
2AK4_D      5 KVTQAQTEISVVEKEDVTLDCVYETRD--TTYYLFWYKQPPSGELVFLIRRNSfdeQNEIS----GRYSWNFQKSTSSFN 78  human
1TVD_A      2 KVTQSSPDQTVASGSEVVLLCTYDTVY--SNPDLFWYRIRPDYSFQFVFYGDDs--RSEGAdftqGRFSVKHILTQKAFH 77  human
CAA78333   23 KVTQDQSDVSSQVGQSVTLNCRYETSW--TAYYIFWYKQLPSGQMTYVIRQSSl-vTNATK----DRYSINFKKADKSIS 95  sheep
BAA08516   23 KVTQDQPVVSRQVGEEVTLNCRYETSW--NEYILFWYKQPPSGEMTFLIRQESk-gLNTKD----GRYSTNFQKAQNLIS 95  pig
AAI47857   57 QVTQVQTVVSSQVGQTVTLNCRYEVSWsmDYYYIFWYKQLPRGEMTFLIHQYSe-yGNARN----GRYSVNFHKAHKSIS 131 cattle
AAQ57272   23 KVTQAQSSVSMPVRKAVTLNCLYETSW--WSYYIFWYKQLPSKEMIFLIRQGSd-eQNAKS----GRYSVNFKKAAKSVA 95  human
Feature 1                   #                        ## # ##       
2AK4_D     79 FTITASQVVDSAVYFCALSGFy--------------nTDKLIFGTGTRLQVFP 117 human
1TVD_A     78 LVISPVRTEDSATYYCAFTLPp--------------pTDKLIFGKGTRVTVEP 116 human
CAA78333   96 LTISALQLEDSAKYFCALSVSytnsegftsgvhyvrdTDKLTFGKGTRLIVEP 148 sheep
BAA08516   96 LTISALQLQDSAKYFCALRDGlwgysgg---ivtrydTDKLIFGKGTQLVVEP 145 pig
AAI47857  132 LIISALQLGDSAEYFCALFSRrrdsr-------swyeTDKLIFGKGTRLIVEP 177 cattle
AAQ57272   96 LTISALQLEDSAKYFCALGELg--------------dTDKLIFGKGTRVTVEP 134 human

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