3LM4


Conserved Protein Domain Family
BphC-JF8_N_like

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cd09013: BphC-JF8_N_like 
Click on image for an interactive view with Cn3D
N-terminal, non-catalytic, domain of BphC_JF8, (2,3-dihydroxybiphenyl 1,2-dioxygenase) from Bacillus sp. JF8, and similar proteins
2,3-dihydroxybiphenyl 1,2-dioxygenase (BphC) catalyzes the extradiol ring cleavage reaction of 2,3-dihydroxybiphenyl, a key step in the polychlorinated biphenyls (PCBs) degradation pathway (bph pathway). BphC belongs to the type I extradiol dioxygenase family, which requires a metal ion in the active site in its catalytic mechanism. Polychlorinated biphenyl degrading bacteria demonstrate a multiplicity of BphCs. This subfamily of BphC is represented by the enzyme purified from the thermophilic biphenyl and naphthalene degrader, Bacillus sp. JF8. The members in this family of BphC enzymes may use either Mn(II) or Fe(II) as cofactors. The enzyme purified from Bacillus sp. JF8 is Mn(II)-dependent, however, the enzyme from Rhodococcus jostii RHAI has Fe(II) bound to it. BphC_JF8 is thermostable and its optimum activity is at 85 degrees C. The enzymes in this family have an internal duplication. This family represents the N-terminal repeat.
Statistics
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PSSM-Id: 319955
Aligned: 10 rows
Threshold Bit Score: 174.845
Created: 2-Jun-2010
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
tetramer
Conserved site includes 12 residues -Click on image for an interactive view with Cn3D
Feature 1:tetramer interface [polypeptide binding site]
Evidence:
  • Structure:3LM4_A/B/C/D; Rhodococcus 2,3-dihydroxy biphenyl dioxygenase tetramer interface, by 4A distance
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1        ##  ##                    #                  #  #                   ###         
3LM4_A         6 RFDIAHLARAELFSPKPQETLDFFTKFLGXYVTHregqSVYLRGYEdpYPWSLKITEApeaGXGHAAXRTSSpeALERRA 85  Rhodococcus sp....
NP_770459      6 ILDLAHLGHMELLTPKPDESLKFFVDVMGMTISGrkgeSVYLRGWDdyERYSLKLTASktsGMEHMALRARSqqALERRV 85  Bradyrhizobium ...
ADB40011       5 IWDLAHLGHVELLTPKLDQSTRFFTEIMGMSITAtagdSIYLRAYDdyEHHTLKLTASpqaGMRHFAWRARSpqALQRRV 84  Spirosoma lingu...
ADB37597       5 PHYLSQLAHLELFSPNVEQTVAFLTNIVGLDETGrddtSVYLRAWGdyFHHTLKITYRaepGLATLGWRADSeeALAEVV 84  Spirosoma lingu...
CAA49258      15 VPRVHNLHHVELLTPKPNESLDFFTRVLGLHETHregqSVYLRGSGewGQYSTILTESptaGLGHMGWQVAEpeHVQGWG 94  Rhodococcus rho...
YP_001634965   5 IFDTHQLAHVEILTPKPDQTLWFFRDLLGMEVTTqqgqSVYLRAYEdwYHHTLKITEArepGLGHVAWRASSpqALERRV 84  Chloroflexus au...
YP_145489      6 IFDVHQLAHVEIYTPNPEGTLWFFRDLLGMEVTKqegqSVYMRAYEdwYHHTLKITEApkpGLGHVAWRTSSpqALERRV 85  Thermus thermop...
P31003         9 IFDVAQLAHVELLSPKLEESIVFFTKYLGMEVTAragnSVYLRAYEdfYHNTLKITESaeaGLGHVGWRASSpqALERRV 88  Geobacillus ste...
ADB48880       2 TPRLVKLGHIALSTPDLERSLWFFRDVVGLDEVEradgVVHLRAWGerEHHSLSLRAGe-tGVDHIAWRASApgDVEAFA 80  Conexibacter wo...
Q8GR45         2 TAEIAKFGHIALITPNLEKSVWFFRDIVGLEEVDrqgdTIFLRAWGdwEHHTLSLTPGnraRVDHIAWRTKRpeDVETFA 81  Bacillus sp. JF8
Feature 1                                               #   #
3LM4_A        86 KSLTDGNVDG-TWSEDQf--GYGKTFEYQSPDGHNLQLLWEAEK 126 Rhodococcus sp. RHA1
NP_770459     86 AALKGSGFDI-GWIDGDm--GQGPTFRCRDPDGHIVELYYETEW 126 Bradyrhizobium japonicum USDA 110
ADB40011      85 EAIQQTPYAI-GWNEGGl--GHGPAFEFHSPDGHLTEIYFETEK 125 Spirosoma linguale DSM 74
ADB37597      85 AYLESIGAGI-GWVDADp--GRGRAYRFQSPDGHTHEVFWDVVW 125 Spirosoma linguale DSM 74
CAA49258      95 RRLKDAGVEH-RFEAGGssfAQGDTVSFEGPYGHKMELFYDFER 137 Rhodococcus rhodochrous
YP_001634965  85 KALEASGFGR-GWLDGDl--GHGPAYQFTTPDGHPMEILWEVDY 125 Chloroflexus aurantiacus J-10-fl
YP_145489     86 KALEATGLGK-GWIDGDl--GHGPAYRFTTPDGHPMELLWEVEY 126 Thermus thermophilus HB8
P31003        89 LELEKSGLGR-GWIDGDi--GHGKAYQFTTPDGHQMEIFFEVEY 129 Geobacillus stearothermophilus
ADB48880      81 ARLEAGGVAVeRVPAGTe-aGQGDAIRFSSPGGHPYEIYFDVDR 123 Conexibacter woesei DSM 14684
Q8GR45        82 EQLKAKGTEV-QWIEPGeekGQGKAIRFRLPNGYPFEIYYDVEK 124 Bacillus sp. JF8

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