1Y4Z


Conserved Protein Domain Family
NarH_beta-like

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cd10557: NarH_beta-like 
Click on image for an interactive view with Cn3D
beta subunit of nitrate reductase A (NarH) and similar proteins
This subfamily includes nitrate reductase A, a member of the DMSO reductase family. The respiratory nitrate reductase complex (NarGHI) from E. coli is a heterotrimer, with the catalytic subunit (NarG) with a molybdo-bis (molybdopterin guanine dinucleotide) cofactor and an [Fe-S] cluster, the electron transfer subunit (NarH) with four [Fe-S] clusters, and the integral membrane subunit (NarI) with two b-type hemes. Nitrate reductase A often forms a respiratory chain with the formate dehydrogenase via the lipid soluble quinol pool. Electron transfer from formate to nitrate is coupled to proton translocation across the cytoplasmic membrane generating proton motive force by a redox loop mechanism. Demethylmenaquinol (DMKH2) has been shown to be a good substrate for NarGHI in nitrate respiration in E. coli.
Statistics
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PSSM-Id: 319879
Aligned: 17 rows
Threshold Bit Score: 726.078
Created: 30-Jan-2014
Updated: 2-Oct-2020
Structure
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Program:
Drawing:
Aligned Rows:
 
Fe-S clustertrimer
Conserved site includes 50 residues -Click on image for an interactive view with Cn3D
Feature 1:Fe-S cluster binding site [ion binding site]
Evidence:
  • Structure:1Y4Z: Escherichia coli nitrate reductase A biinds to 4[Fe-S] clusters; contacts at 4A distance.
    View structure with Cn3D

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                     #######   #   #          ## #                                      
1Y4Z_B         3 IRSQVGMVLNLDKCIGCHTCSVTAKNVWTSREGVEYAWFNNVETKPGQGFPTDWENQEKYKGGWIRKINGKlqprmgnra 82  Escherichia coli
WP_020487740   5 VMAQVGMVMNLDKCIGCHTCSVTCKQAWTNRAGTEYVWFNNVETRPGQGYPRRYEDQERWRGGWVRTKSGGlklraggrv 84  Dehalobacter sp...
CAA71211       3 VRAHMSMLFHLDKCIGCHTCSIACKNLWTDRKGAEYMWWNNVETRPGAGYPTGWEDQERFRGGWEYKDGHLdlrlhsr-t 81  Thermus thermop...
AAL65043       3 VRAQITMAMNLDKCIGCHTCSVTCKNVWTNRAGAEYMWWNNVETRPGPGYPRQWEDQNKYNGGWALDGGKLklk------ 76  Pyrobaculum aer...
WP_008480725   3 IRAQVSMTFHLDKCIGCHTCSIACKNIWTDRKGTEYMWWNNVETKPGTGYPTLWEDQSKYRGGWERTGDKIrlklqgr-r 81  Nitrolancetus h...
WP_006968767   3 IKVQYAMVMNLDKCIGCHTCSIPCKNVWTSREGAEYMWFNNVETKPGIGYPGKWENQQIYRGGWTVKGNRLklaaggr-i 81  Desulfotignum p...
KBZ59063       3 VMAQLAMVMNLDKCIGCHTCSVTCKQAWTNRPGTEYVWFNNVETRPGQGYPRTYEDQERWRGGWIRDKKGRlrlrdggrl 82  Mycobacterium t...
KPQ44268       3 IRAQVSMVFHLDKCIGCHTCSVACKNIWTDRKGTEYMWWNNVETKPGTGYPTLWQDQDKYKGGWEKKEDKLslklqgr-i 81  Candidatus Meth...
KJS04194       3 IRSQIAMVFHLDKCIGCHTCSVACKNIWTDRKGAEYMWWNNVETKPGTGYPTKWEDQDIYQGGWKKDGDSVslkgagk-l 81  Flavobacteriale...
ADC64492       3 VRAQLVMVFNLDKCLGCHTCSIACKNIWTDRRGAEYMWWNNVETKPGAGYPKFWEDQKRYKGGWVLRGDKLklrafsk-l 81  Ferroglobus pla...
Feature 1                                                                                        
1Y4Z_B        83 mllgkIFANPHLPGIDDYYEPFDFDYQNLhtapegsksQPIARPRSLITGERMakiekGPNWEDDLGGefdklAKDKNFD 162 Escherichia coli
WP_020487740  85 qkllsIFASPVQPELDDYYEPWTYDYANLvsap-lgddFPVARPKSLITGEDTrv-twSANWDDSLGGsqesmAADPIVE 162 Dehalobacter sp...
CAA71211      82 qglfrLFFNPALPSLDDYYEPFTFRYADLftap-egedQPTAVPVSMITGEPMtp-eaGPNWDDDLSGsplyaKNDPNLK 159 Thermus thermop...
AAL65043      77 ---ieLTKNYKPPSLKDYYEPWTYDYEALfsdk-qtdqQPVARPISLITDEPMdv-ayGPNWNDDLAGtd-yiLEDPNLD 150 Pyrobaculum aer...
WP_008480725  82 aglanIFFNPYLPTVDDYYEPWTYQYEDLfnap-egddQPTARPISLITGKPIdi-eaGPNWDDDLGGstvyaANDPNKA 159 Nitrolancetus h...
WP_006968767  82 hkamnIFHNPDLPVIDDYYEPWDYDYDRLiksp-pknhQPTVRSHSCLTGEPMdp-awGPNWEDDLAGlsetgAGDVNFN 159 Desulfotignum p...
KBZ59063      83 hkllrIFANPKLPLIGDYYEPWTYDYENLttap-agdtFPTAAPKSAITGEPMki-swGPNWDDNLAGspeilAEDPILK 160 Mycobacterium t...
KPQ44268      82 galanIFFNPSLPTIDDYYEPWTYRYEELfnap-pgddQPTARPVSLITSRPIdi-eaGPNWDDDLGGsqlyaKNDPVLK 159 Candidatus Meth...
KJS04194      82 kglknIFHNPNMPVLDDYYEPWAYRYQDLfdap-egddQPIGRAVSLITGEPIei-qsGPNWDDDLSGtpdyaRQDVNFK 159 Flavobacteriale...
ADC64492      82 stllnIFYQPHMPRLEDYYHPWTYDYAKLyesp-eesdQPVAEPISLISGEKIdi-efGPNWDDDLGGsplyaEEDINLD 159 Ferroglobus pla...
Feature 1                              #  ####  ###   ##     #  #        # #    #######   # #  # 
1Y4Z_B       163 Niqka----mysQFENTFMMYLPRLCEHCLNPACVATCP-----SGAIYKREEDGIVLIDQDKCRGWRMCITGCPYKKIY 233 Escherichia coli
WP_020487740 163 KlrdeanekirmSYEQSFMFFLPRICEHCLNPSCMASCP-----SGAIYKRSEDGIVLVDQNRCRGWRQCITGCPYKKIY 237 Dehalobacter sp...
CAA71211     160 Alapev-raqleEIEGVVFQYLPRICNHCLNPACVAACP-----SGAIYKRAEDGVVLVNENKCKAWRMCVAACPYKKVY 233 Thermus thermop...
AAL65043     151 Glqre----iyaQFKDVFMMYLPRICNHCLNPSCLAACP-----RKAIYKREEDGIVLIDQNRCRGYRYCVAACPYKKVY 221 Pyrobaculum aer...
WP_008480725 160 Vltdee-krqlnELERLIFFYLPRICNHCLNPGCVAACP-----AGAIYKRGEDGIVLISQEKCRAWRMCVSGCPYKKTY 233 Nitrolancetus h...
WP_006968767 160 Rleid----tylKFKNLFMFWLPRLCEHCLNPACVASCP-----SGALYKRDEDGIVLVDQERCRGWRYCVSGCPYKKVY 230 Desulfotignum p...
KBZ59063     161 Kvsee----vklSLEETFMFYLPRICEHCLNPSCVASCP-----SGAMYKRSEDGIVLVDQDRCRGWRMCVSGCPYKKVY 231 Mycobacterium t...
KPQ44268     160 Nsteee-rhllnEVERNVFFYLPRICNHCLNPGCVAACPagavnPGAMYKRGEDGIVLISPEKCRAWRMCVSGCPYKKVY 238 Candidatus Meth...
KJS04194     160 Hlsqae-qeamfQLEKMTFHYLPRICNHCLNPACVASCP-----SGALYKRGEDGVVLINQERCRAWRMCVTACPYKKSY 233 Flavobacteriale...
ADC64492     160 Erri------vtNFGSIFMFYLPRICNHCLNPACVAACP-----QRAIYKRGEDGIVLVDQNTCRGWRFCVTACPYKKVY 228 Ferroglobus pla...
Feature 1               # #####         ###   ### ##                                             
1Y4Z_B       234 FNWKSGKSEKCIFCYPRIEAGQPTVCSETCVGRIRYLGVLLYDADaier-aastENEKDLYQRqlDVFLDPNDPKVIEQA 312 Escherichia coli
WP_020487740 238 FNHRSGKAEKCTFCYPRLEVGLPTVCAETCVGRLRYVGIVLYDPDavta--aasVPDEELYDAqlGLLLDPHDPEVIADA 315 Dehalobacter sp...
CAA71211     234 YNWATGKSEKCILCFPRLETGQAPACAHSCVGRIRYMGVLLYDADripe--aamVPDEELVESqlSLILDPFDPEVIAAA 311 Thermus thermop...
AAL65043     222 YNWKTGKSEKCILCYPSVEAGQPTVCSLTCVGKIRYMGVLLYDADkvldvaatpDPAQLVRRFidEVLLDPFDPAVIEAA 301 Pyrobaculum aer...
WP_008480725 234 FNWATGKSEKCILCYPRLESGHAPACFHSCVGRIRYLGLVLYDADkiqe--tasVPDRDLVEAqrAIIQDPFDPKIIAAA 311 Nitrolancetus h...
WP_006968767 231 FNWKQGRAEKCIFCYPRIEAGLPTLCAHSCVGRIRYVGVLLYDADrile-aaavPRDKDVYPAhlDILMDPNDPETIQAA 309 Desulfotignum p...
KBZ59063     232 FNHKTGKAEKCTLCYPRMEVGLPTICSETCVGRLRYLGVVLYDVDrvlq-aasvEKETDLYPAqcEILLDPNDPEVIAGA 310 Mycobacterium t...
KPQ44268     239 YNWATGKSEKCILCYPRLESGHAPACFHVCVGRVRFLGILLYDADriqe--tasVNDTDLVEAqrAIIQDPFDFQVIAAA 316 Candidatus Meth...
KJS04194     234 YNWNTGKSEKCVLCYPRLESGQPPACMHSCVGRIRYLGVMLYDADriqa--vasCDESEIVDRhmDIYLNPNDPTVIKAA 311 Flavobacteriale...
ADC64492     229 YNWNTGKSEKCIFCYPRTETAQANACAHSCVGRIRYVGVVLYDADried--alkVKDEELVEAqrKIILDPRDEMVRKAA 306 Ferroglobus pla...
Feature 1                                                                
1Y4Z_B       313 IKDGIPlsVIEAAQQSPVYKMAMEWKLALPLHPEYRTLPMVWYVPPLSPIQSAADA 368 Escherichia coli
WP_020487740 316 RAGGMAedWIAAAQRSPVYALIKHFKVALPLHPEYRTMPMVWYIPPLSPVVDLLKE 371 Dehalobacter sp. FTH1
CAA71211     312 KAEGIDegWIQAAQKSPIYKFVKTWGLALPLHPEYRTLAMMFYVPPLSPVVATVEK 367 Thermus thermophilus HB8
AAL65043     302 RKNGIPdyWITAAQRSPVYKIVKKWKVGFPLRPEFRVLPMVFYVPPLSPVVTTFEK 357 Pyrobaculum aerophilum str. IM2
WP_008480725 312 LANGVTanQIDSAQRSPVYKFVKKWKIALPLHPEFRTLPMLFYVPPMGPMQAAVSG 367 Nitrolancetus hollandicus
WP_006968767 310 KAQGIAsnVLSAARRSPVYSLIRQWRLALPLHPEYRTLPMVWYIPPLSPVSRQVAD 365 Desulfotignum phosphitoxidans
KBZ59063     311 RAEGIPdeWIEAAQRSPVYALIHTYKVALPLHPEYRTMPMVWYIPPLSPVVDAVSR 366 Mycobacterium tuberculosis TKK-01-0051
KPQ44268     317 KANGISdaMIDSAQKSPVYKFVKQWKIALPLSPQFRTLPMLFYVPPLLPVLATMKN 372 Candidatus Methanoperedens sp. DS-2015
KJS04194     312 RENGIAdsTIKAAQNSPVYKFVKEWKIALPLHPEFRTLPNLFYVPPLLPAMASVST 367 Flavobacteriales bacterium BRH_c54
ADC64492     307 KENGVPdnWLEAALKSPAYALIKEYELALPLHPEFRTMPMTFYIPPLSPVLAVHRA 362 Ferroglobus placidus DSM 10642

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