1XIO,2M3G


Conserved Protein Domain Family
7tm_ASR-like

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cd15240: 7tm_ASR-like 
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Anabaena sensory rhodopsin and similar proteins, member of the seven-transmembrane GPCR superfamily
This subgroup includes eubacterial sensory rhodopsin from the freshwater cyanobacterium Anabaena and its closely related proteins. Unlike other sensory rhodopsins (SRI and SRII), the Anabaena sensory rhodopsin (ASR) activates a soluble transducer protein (ASRT), which may leading to transcriptional control of several genes. Although ASRT was shown to interact with DNA in vitro, the exact mechanism of photosensory transduction is not clearly understood. Moreover, the regulation of CRP (cAMP receptor protein) expression by ASR has been reported demonstrating a direct interaction of the C-terminal region of ASR with DNA, suggesting that ASR itself may also work as a transcription factor. ASR belongs to the microbial rhodopsin family, also known as type I rhodopsins, comprising the light-driven inward chloride pump halorhodopsin (HR), the outward proton pump bacteriorhodopsin (BR), the light-gated cation channel channelrhodopsin (ChR), the light-sensor activating transmembrane transducer protein sensory rhodopsin II (SRII), and the other light-driven proton pumps such as blue-light absorbing and green-light absorbing proteorhodopsins, among others. Microbial rhodopsins have been found in various single-celled microorganisms from all three domains of life, including halophile archaea, gamma-proteobacteria, cyanobacteria, fungi, and green algae. While microbial (type 1) and animal (type 2) rhodopsins have no sequence similarity with each other, they share a common architecture consisting of seven-transmembrane alpha-helices (TM) connected by extracellular loops and intracellular loops. Both types of rhodopsins consist of opsin and a covalently attached retinal (the aldehyde of vitamin A), a photoreactive chromophore, via a protonated Schiff base linkage to an amino group of lysine in the middle of the seventh transmembrane helix (TM7). Upon the absorption of light, microbial rhodopsins undergo light-induced photoisomerization of all-trans retinal into the 13-cis isomer, whereas the photoisomerization of 11-cis retinal to all-trans isomer occurs in the animal rhodopsins. While animal visual rhodopsins are activated by light to catalyze GDP/GTP exchange in the alpha subunit of the retinal G protein transducin (Gt), microbial rhodopsins do not activate G proteins, but instead can function as light-dependent ion pumps, cation channels, and sensors.
Statistics
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PSSM-Id: 320368
View PSSM: cd15240
Aligned: 5 rows
Threshold Bit Score: 300.94
Threshold Setting Gi: 392728293
Created: 16-Feb-2014
Updated: 26-Jul-2017
Structure
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Program:
Drawing:
Aligned Rows:
  next features
Conserved site includes 14 residues -Click on image for an interactive view with Cn3D
Feature 1:ligand binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
                         10        20        30        40        50        60        70        80
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Feature 1                                                                                        
1XIO_A         2 NLESLLHWIYVAGMTIGALHFWSLSRNPRGvpQYEYLVAMFIPIWSGLAYMAMAIdqgkvea--------agqiahYARY 73
2M3G_A         2 NLESLLHWIYVAGMTIGALHFWSLSRNPRGvpQYEYLVAMFIPIWSGLAYMAMAIdqgkvea--------agqiahYARY 73
gi 380735608  40 NMDQTAFLIGFSVMAIASLVIYATGSKTFPs-RHHTLMHASVPFIAATAYLAMAFgfgnltl-------dsgstvyLARY 111
gi 168193152   1 MTVQTWLWLTLFAMSLGAAAILFTAKRRTPeeETDGILHGIVPLIAAASYLAMACgqgairlplg-adpaaqwdfyFARY 79
gi 392728293   1 MTPQFWLWLGFVGMAAGAAVILFLAKRRTPaeEADGIIHGIVPIIAACSYFAMATgqgsivlpagpdaaeaarqfyFARY 80
                         90       100       110       120       130       140       150       160
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|....*....|
Feature 1          #   #  #                             #   #                  #  ##  #          
1XIO_A        74 IDWMVTTPLLLLSLSWTAMqfi-kkdWTLIGFLMSTQIVVITSGLIADlse---rdwVRYLWYICGVCAFLIILWGIWNP 149
2M3G_A        74 IDWMVTTPLLLLSLSWTAMqfi-kkdWTLIGFLMSTQIVVITSGLIADlse---rdwVRYLWYICGVCAFLIILWGIWNP 149
gi 380735608 112 ADWSITTPILLAGLVMLAFheh-gkpGEMGGFLTAIIVLDVMMIITGLvsslaetaaAKWVWYLWSCAAFLGVVYLLWGP 190
gi 168193152  80 IDWTFTTPILLYALATDAMhsgmrrhGAVFGMLAADVLMIATALFFGAsat----awIKWTWYAVSCGAFLGVYYVIWVP 155
gi 392728293  81 IDWTFTTPLLLVGLARTAMhsgmrrpAVVWGLIGSDLIMIVTALAFGLsdv----aaVKWTWFAISCGAFGAVFYGIFVQ 156
                        170       180       190       200       210       220       230
                 ....*....|....*....|....*....|....*....|....*....|....*....|....*....|..
Feature 1                                  #  ##  #                          #           
1XIO_A       150 LRAktrtqsSELANLYDKLVTYFTVLWIGYPIVWIIGPSGfgwinqTIDTFLFCLLPFFSKVGFSFLDLHGL 221
2M3G_A       150 LRAktrtqsSELANLYDKLVTYFTVLWIGYPIVWIIGPSGfgwinqTIDTFLFCLLPFFSXVGFSFLDLHGL 221
gi 380735608 191 LRTmaanrgSALAGAYNKNVALLTVVWFIYPIVFLVGPEGlkiitdPSSVWAFLVLDIIAKVFYAFYAAANL 262
gi 168193152 156 LLEesrrerEDVRAAFRRNAAFLSVVWLIYPLVLIVGTDGlklvspVLTTALIAVLDVVAKVVFGLMAVGER 227
gi 392728293 157 LREenagerADVRTAFRRNAVFLTAVWCAYPVVLLVGQDGlgflspTLALAVIAILDLTAKVVYGILATMET 228

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