3A7K,2JAF,1E12


Conserved Protein Domain Family
7tm_Halorhodopsin

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cd15243: 7tm_Halorhodopsin 
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light-driven inward chloride pump halorhodopsin, member of the seven-transmembrane GPCR superfamily
Halorhodopsin (HR) acts as a light-driven inward-directed chloride pump. When activated by yellow light, HR pumps chloride ions into the cell cytoplasm, generating a negative-inside membrane potential which drives proton uptake. The resulting electrochemical ion gradient provides an energy source to the cell and contributes to pH homeostasis. HR is found in phylogenetically ancient archaea, known as halobacteria which live in high salty environments. HR belongs to the microbial rhodopsin family, also known as type I rhodopsins, comprising light-driven retinal-binding outward pump bacteriorhodopsin (BR), light-gated cation channel channelrhodopsin (ChR), light-sensor activating transmembrane transducer protein sensory rhodopsin II (SRII), light-sensor activating soluble transducer protein Anabaena sensory rhodopsin (ASR), and other light-driven proton pumps such as blue-light absorbing and green-light absorbing proteorhodopsins, among others. They have been found in various single-celled microorganisms from all three domains of life, including halophile archaea, gamma-proteobacteria, cyanobacteria, fungi, and green algae. While microbial (type 1) and animal (type 2) rhodopsins have no sequence similarity with each other, they share a common architecture consisting of seven-transmembrane alpha-helices (TM) connected by extracellular loops and intracellular loops. Both types of rhodopsins consist of opsin and a covalently attached retinal (the aldehyde of vitamin A), a photoreactive chromophore, via a protonated Schiff base linkage to an amino group of lysine in the middle of the seventh transmembrane helix (TM7). Upon the absorption of light, microbial rhodopsins undergo light-induced photoisomerization of all-trans retinal into the 13-cis isomer, whereas the photoisomerization of 11-cis retinal to all-trans isomer occurs in the animal rhodopsins. While animal visual rhodopsins are activated by light to catalyze GDP/GTP exchange in the alpha subunit of the retinal G protein transducin (Gt), microbial rhodopsins do not activate G proteins, but instead can function as light-dependent ion pumps, cation channels, and sensors.
Statistics
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PSSM-Id: 320371
Aligned: 7 rows
Threshold Bit Score: 309.809
Created: 16-Feb-2014
Updated: 25-Oct-2021
Structure
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Program:
Drawing:
Aligned Rows:
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Conserved site includes 18 residues -Click on image for an interactive view with Cn3D
Feature 1:putative ligand binding site [chemical binding site]
Evidence:

Sequence Alignment
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Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                     
3A7K_A     32 PLLASSLYINIALAGLSILLFVFMTRGLDDpraKLIAVSTILVPVVSIASYTGLASGLTISVLEMPAGHFAEGssvmlgg 111 Natronomonas phara...
2JAF_A     27 ALLSSSLWVNVALAGIAILVFVYMGRTIRPgrpRLIWGATLMIPLVSISSYLGLLSGLTVGMIEMPAGHALAGemv---- 102 Halobacterium sali...
1E12_A      6 ALLSSSLWVNVALAGIAILVFVYMGRTIRPgrpRLIWGATLMIPLVSISSYLGLLSGLTVGMIEMPAGHALAGemv---- 81  Halobacterium sali...
AFZ74148   25 TLLALSFVVNIALAGLTILFIVALARGVTDpraKLIVISTMLISVVSISSYTGLASGLTLSFIEMPAGHSLAGeev---- 100 Natronobacterium g...
P33742     32 TLLASSLWINIALAGLSILLFVYMGRNVEDpraQLIFVATLMVPLVSISSYTGLVSGLTVSFLEMPAGHALAGqev---- 107 Halobacterium sp. SG1
P94853     27 FLLNSSLWVNIALAGVVILLFVAMGRELESsraKLIWVATMLVPLVSISSYAGLASGLTVGFLQMPPGHALAGqev---- 102 Haloarcula vallism...
AAT76430    9 AALASSIYVNIALAGLTIIVIAVMSRSIHDsraKLITMSTLMISVVSISSYMGLASGLTIDPLVMPEGHPLAGqev---- 84  Salinibacter ruber...
Feature 1                 #  #  ##  #                        #   #                #  ##  #    
3A7K_A    112 eevdgvvtmWGRYLTWALSTPMILLALGLLAGsnaTKLFTAITFDIAMCVTGLAAALTTsshlmRWFWYAISCACFIVVL 191 Natronomonas phara...
2JAF_A    103 ------rsqWGRYLTWALSTPMILLALGLLADvdlGSLFTVIAADIGMCVTGLAAAMTTsallfRWAFYAISCAFFVVVL 176 Halobacterium sali...
1E12_A     82 ------rsqWGRYLTWALSTPMILLALGLLADvdlGSLFTVIAADIGMCVTGLAAAMTTsallfRWAFYAISCAFFVVVL 155 Halobacterium sali...
AFZ74148  101 ------ltmWGRYLTWAFSTPFILIVLGMIAGsniTKIMTTVAMTIAMCVTGLAAALTTssllmRWWWFVLSSAFFLVII 174 Natronobacterium g...
P33742    108 ------ltpWGRYLTWALSTPMILIAVGLLAGsntTKLFTAVVADIGMCVTGLAAALTTssyllRWVWYAISCAFFVVVL 181 Halobacterium sp. SG1
P94853    103 ------lspWGRYLTWTFSTPMILLALGLLADtdmASLFTAITMDIGMCITGLAAALVTsshllRWVFYGISCAFFIAVL 176 Haloarcula vallism...
AAT76430   85 ------lslWGRYLTWAFSTPFILLALGLLARsttDKIFSAIVLDVFMCLTGLAAALTTsshamRWLWYALSTAFFVGVL 158 Salinibacter ruber...
Feature 1                                   #  ##  #                       #  ##           
3A7K_A    192 YILLVEWAQdakaAGTADIFSTLKLLTVVMWLGYPIVWALGVEGvav-lpVGYTSWAYSALDIVAKYIFAFLLLNYL 267 Natronomonas pharaonis
2JAF_A    177 SALVTDWAAsassAGTAEIFDTLRVLVVVLWLGYPIVWAVGVEGlalvqsVGATSWAYSVLDVFAKYVFAFILLRWV 253 Halobacterium salinarum
1E12_A    156 SALVTDWAAsassAGTAEIFDTLRVLTVVLWLGYPIVWAVGVEGlalvqsVGATSWAYSVLDVFAKYVFAFILLRWV 232 Halobacterium salinarum
AFZ74148  175 YVIMVDWTReadrTGTSDLFTTLKILTVVGWFGYPILWALGVEGfal-leVWMTSWGYSVLDIITKYIVTVLIVLYV 250 Natronobacterium greg...
P33742    182 YILLAEWAEdaeiAGTADIFNTLKVLTVVLWLGYPIFWALGAEGlav-ldVAITSWAYSGMDIVAKYLFAFLLLRWV 257 Halobacterium sp. SG1
P94853    177 YVLLVEWPAdaeaAGTSEIFGTLKLLTVVLWLGYPILWALGSEGval-lsVGVTSWGYSGLDILAKYVFAFLLLRWV 252 Haloarcula vallismortis
AAT76430  159 YYLLVEWPAeadeAGTADIFSTLQWMTIVLWIGYPVVWALGNEGlal-leVGATSWAYSGLDIFAKYAFTIILVLYV 234 Salinibacter ruber DS...

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